Gene Smed_2112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2112 
Symbol 
ID5322972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2173945 
End bp2174730 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content60% 
IMG OID640791050 
Productglycoside hydrolase family protein 
Protein accessionYP_001327780 
Protein GI150397313 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.140639 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCGGT TGTTCGTGGC TTTGCTGCCC ATCGCAGCCA TCCTGTCCTC CTGCACGTCG 
ACCGACTACG ACCTCATCAA GACGGCTTCC ATACAGCCTC GCTTCCACGA CACGGATCCG
CAGGATTTCG GCGGCAACAC GCCACACCAT CACAACGTTC ACGGAATTGA CGTCTCCAAG
TGGAATGGCG ACATCGACTG GCGCAAGGTC AAGAATTCCG GCGTGTCCTT CGCTTTCATC
AAGGCCACGG AAGGCAAGGA CAGAGTGGAC GCCCGTTTCC ACGAATACTG GCCCCAGGCG
CGCGCCGCCG GCATCGCCTA CGCGCCCTAC CATTTCTATT ATTTCTGCTC GACCGCCGAT
GCGCAGGCCA ATTGGTTCAT CGCCAATGTG CCGAAGAGCG CCGTCTACCT GCCGCCCGTC
CTGGACGTCG AGTGGAATGG CGAATCCAAG ACCTGCCGCA CCCGACCGGC GCCCGAGACG
GTGCGCTCCG AAATGAAGCG CTTCATGGAT CGGCTCGAGG CACATTACGG CAAACGGCCA
ATCATCTACA CGTCGGTCGA TTTTCATCGC GACAATCTGG TCGGCGCCTT CAATGACTAT
CATTTCTGGG TGCGGTCCGT CGCCAAGCAC CCGAAGGATA TCTACGTCGA TCGCCGGTGG
GCCTTCTGGC AATATACCAG CACAGGCGTG ATCCCCGGCA TCCAAGGCAG CACGGACATC
AACGCCTTCG CAGGCTCCCA CAGAAATTGG AAGAAGTGGG TCGCGACTGT TTCGCAGGCG
AGATAG
 
Protein sequence
MRRLFVALLP IAAILSSCTS TDYDLIKTAS IQPRFHDTDP QDFGGNTPHH HNVHGIDVSK 
WNGDIDWRKV KNSGVSFAFI KATEGKDRVD ARFHEYWPQA RAAGIAYAPY HFYYFCSTAD
AQANWFIANV PKSAVYLPPV LDVEWNGESK TCRTRPAPET VRSEMKRFMD RLEAHYGKRP
IIYTSVDFHR DNLVGAFNDY HFWVRSVAKH PKDIYVDRRW AFWQYTSTGV IPGIQGSTDI
NAFAGSHRNW KKWVATVSQA R