| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2108 |
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| Symbol | |
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| ID | 5322968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 2169202 |
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| End bp | 2170203 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640791046 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001327776 |
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| Protein GI | 150397309 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.344374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCATT TCCGTATCCC CCTTTCGAAA CGGGCACTCA CCGCCGTGTC CGTCGTGTCC
GTCGTCGTTG CTTCGGGCTG TTCAACGGTG GAGCATACAT CGCTTGCGGA GTTGACGGCG
GTACAGACAG TAACGCCCCT GCCGAAGCCC GGAACGGAAA CCACGGCTTA TGCGCTGCCT
TCGCCGATCG GTGCCGCGTC GAGCACAACG GCAGCACTGA GCGCGCAGAC CTCGCCCACG
GTGCCGGCAA GCGCCACAAC GGCAGATGCT GGAGCGAACA CGGCGCCCGC CACGGACGCG
ACCCTGGCCT TTGCCGCACC TCGCTCCGCT GCGGTGCCGG CGGAGAAGCC CGCCCAAGTC
TTTGACGTGG CCATGGCGAC ACCCGCCTTG CCGAATCTCT CCCAGGCCGC TGCCCCGATC
CAAAAGAACG CTGAACAACC CGCCCCCTTC ATCGGAATTG CCGCCTCCTG GGATTCGGAT
TTCGACACCG GCGAGCCTGT CGGACTTGAA ACACTCGTGG CCAAGCGCAT GATCGTGCCG
ACGGAGCGCC CGAAGACGGA CCTGATCGGC ACGGCCGTCG ATGCGGCAGT GGGTGCGGTC
GCAAGCGCTA TCCCCGAGTC GTTGAAGTTT TCGAAGACAC CGACCAGTTC GCGGCCCGAA
CTCGACAGGA TGATCAAATA TTATGCCGAG CTGAACGGTC TGCCTCTCGA CCTGGTGCAT
CGGGTGGTCA AGCGGGAGAG CAACTACAAT CCGCGCGCCT ATAGCAAGGG CAATTACGGG
CTGATGCAGA TTCGCTATAA CACCGCCAAA GGTCTTGGCT ATGAAGGGTC GGCCGAGGGC
CTTTTCGATG CGGAAACCAA CCTCAAATAT GCGACTAGAT ACCTGCGCGG AGCGTGGATG
GTTGCCGACA ACAAGAATGA CGGCGCGGTC AAGCTCTACG CCAGCGGCTA TTATTACCAT
GCCAAGCGCA AGGGCATGCT GGACGAGCTG AACATGAGGT GA
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| Protein sequence | MAHFRIPLSK RALTAVSVVS VVVASGCSTV EHTSLAELTA VQTVTPLPKP GTETTAYALP
SPIGAASSTT AALSAQTSPT VPASATTADA GANTAPATDA TLAFAAPRSA AVPAEKPAQV
FDVAMATPAL PNLSQAAAPI QKNAEQPAPF IGIAASWDSD FDTGEPVGLE TLVAKRMIVP
TERPKTDLIG TAVDAAVGAV ASAIPESLKF SKTPTSSRPE LDRMIKYYAE LNGLPLDLVH
RVVKRESNYN PRAYSKGNYG LMQIRYNTAK GLGYEGSAEG LFDAETNLKY ATRYLRGAWM
VADNKNDGAV KLYASGYYYH AKRKGMLDEL NMR
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