| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2086 |
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| Symbol | |
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| ID | 5322945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2143909 |
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| End bp | 2145342 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640791023 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001327754 |
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| Protein GI | 150397287 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00119682 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAACTGGC TCTGGACAAG CAGCGATCTT CTGGGCGCGA TGAACGGCCG TCCCGTCGGG
AACCTGCCGG AAGGGATCAC CGGCATTTCG ATCGACAGCC GGACAATCGG CAATGGCGAG
GCTTTTTTCG CGATCAGGGG CGATCGCGTC GACGGCCATG ACTATGCGGG GATCGCCCTT
GCTAACGGAG CAGCGCTTCT TGTCGTCAGC GAAGCGAAGC TGCCGGCGCT CGGGCGCCTG
ATCGCCCCGA TGATCGTCGT GGACGACGTG CTGGAGGCAA TGATCCGGCT GGGTTGCGCG
GCACGCGACC GAAGCGCCGC AAAGATCATT GCCGTTACCG GATCGGTCGG CAAGACCACG
ACGAAAGAGA TGTTGAGGCA CATGCTTTCG CCGCTGGGTC GGGTCCACGC CTCCGTCGCA
TCCTTCAACA ATCACTGGGG CGTGCCCCTG ACGCTTGCCC GAATGCCGGA GACGACCGAT
TACGGCGTCT TTGAGATCGG GATGAACCAT GCCGGCGAAA TTCGGCCGCT GACACGGATG
GTTCGTCCGC ATGTGGCGGT CGTGACCAGC ATTGCTGCCG CCCATCTCGG GAATTTTGCG
AGTCTGGACG ACATCGCCGC GGCCAAGGCT GAGATCTTCG AGGGGGTCGT CAACGGCGGC
CATGCGGTGA TCAACAGGGA CAGTGCTCAA TACGAACTGC TGGAGAAGGC CGCCGCGACA
GCCGGGGTCA GCCATGTCCA TTTCTTCGGC GCCAATCCAA AATCGGAATT CCGCCTGGCC
GAGTTCGCCG GTGGTGCGGA AGGTTCGGTG CTGTGGGCGG GTGTCGGAGG CAGAACGCTT
GAAATCGCGA TTGGCGCACC GGGGCGCCAT ATCGCCGAGA ACGCTCTGGC GGCGATCGCC
GCAGCGACAC TGGCAGGCGC GGACACAGAT CGCGTCGCCG CATCGCTTGC AACCATGCAG
CCGGAAAAGG GCAGGGGATT GCGGCACCGT CTCAGGATGG GTGCCGGCTA CATGACGCTG
ATCGACGAGA GCTATAACGC CAACCCGGCT TCAATGCGGG CGGCGATCAC GCTGCTCCGC
GATGCCGAGC CCTCGCCCGG CGGCCGGCGC ATCGCCATTC TTGGCGACAT GCTGGAAATG
GGCGAGCATT CGGCGGCGGT TCATGCGGCA CTTGCGAGAC CCATTGTCGA TGCGGGTATC
GCCGACGTCT GGCTGACGGG GACCGAGATG GCACATTTGC GCGATGCCCT GCCGTCGGAG
GTGTCCGTCG TCCATCGCGA TCTGGTGAGC GACCTGACGG CCTACGCTCT CGGCGCAGTT
GCAGCCGGCG ACGTGGTGAT GGTCAAGTCT TCGAAAAGCA CCGGTTGCGC AAAGATCGTC
CAGGCGCTTC TCGATGCCCA TCCGCATGAC GAGGCCGGAA AAAGGGAAGC ATAG
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| Protein sequence | MNWLWTSSDL LGAMNGRPVG NLPEGITGIS IDSRTIGNGE AFFAIRGDRV DGHDYAGIAL
ANGAALLVVS EAKLPALGRL IAPMIVVDDV LEAMIRLGCA ARDRSAAKII AVTGSVGKTT
TKEMLRHMLS PLGRVHASVA SFNNHWGVPL TLARMPETTD YGVFEIGMNH AGEIRPLTRM
VRPHVAVVTS IAAAHLGNFA SLDDIAAAKA EIFEGVVNGG HAVINRDSAQ YELLEKAAAT
AGVSHVHFFG ANPKSEFRLA EFAGGAEGSV LWAGVGGRTL EIAIGAPGRH IAENALAAIA
AATLAGADTD RVAASLATMQ PEKGRGLRHR LRMGAGYMTL IDESYNANPA SMRAAITLLR
DAEPSPGGRR IAILGDMLEM GEHSAAVHAA LARPIVDAGI ADVWLTGTEM AHLRDALPSE
VSVVHRDLVS DLTAYALGAV AAGDVVMVKS SKSTGCAKIV QALLDAHPHD EAGKREA
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