Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2084 |
Symbol | murD |
ID | 5322943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2141181 |
End bp | 2142572 |
Gene Length | 1392 bp |
Protein Length | 463 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640791021 |
Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
Protein accession | YP_001327752 |
Protein GI | 150397285 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0517095 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000454332 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATCCCGG TCACTTCATT CAAGGGTAGG AAGGTCGCAC TCTTCGGGCT GGGCGGCTCC GGACTGGCGA CCGCCCAGGC GCTCGTTGCA GGCGGAGCCG ATGTGGTGGC TTGGGACGAC AACCCCGACA GCGTCGCCAA GGCGGATCAG GCCGGGATCG CGACGGCCGA TCTGCGGGGC GAGGAATGGC ATGCCTTTTC CGCCTTGGTC CTTTCGCCCG GCGTGCCGCT GACCCATCCA AAGCCGCATT GGAGCGCCGA CCTCGCGCAT CATGCCGGCG TCGAGATCAT CGGCGATGTC GAGCTGTTCG TGCGCGAGCG GCGCAAGCAC GCGCCTGACT GCCCTTTCAT TGCCATCACC GGCACCAACG GCAAATCCAC GACGACGGCG CTGATCGCCC ATATCCTGCG CGCAAGTGGG CGGGACACAC AGCTCGGCGG CAATATAGGC ACAGCGGTGC TGACGCTGGA GCCGCCGCAG GCGGACCGCT TCTATGTCGT CGAATGCTCA TCCTACCAGA TCGACCTGGC ACCCACGCTC GATCCCACCG CCGGGATACT CCTCAACCTC ACGCCGGATC ATCTGGATCG CCATGGTACG ATGCAGCACT ATGCCGACAT CAAGGAGCGC CTGGTGGCGG GGAGCGGAAC GGCGATTGTC GGTGTCGACG ACAGCCTTTC GAGTCTGATT GCCGACCGGG TGGAGCGAGC AGGTACCAAG GTCGTGCGTA TCTCGCGCCG TCATCCGCTT GCCGAAGGTG TCTATGCCGA AGGTACGGCG CTGATGCGTG CGACTGGCGG GGCATCGTCG CTCTTTACCG ACCTTGCCGG GATCCAGACG CTGCGTGGCG GTCACAATGC CCAGAATGCC GCGGCCGCGA TCGCCGCGTG CCTGGCGGTC GGCATTTCCG AAAAGGACAT AGTGGACGGC CTCAGAAGCT TTCCGGGGCT CAAGCACCGG ATGCAGCCGG TTGCGAAGAA GGGCGAGACC ATCTTCGTCA ACGATAGCAA GGCGACCAAC GCCGAGGCCG CAGCACCGGC GCTGTCGAGT TACGACCGTA TCTACTGGAT CGCCGGCGGT CTGCCGAAGG AGGGCGGCAT CACCTCGTTG ACGCCATTCT TTCCGAAAAT CGTCAAAGCC TATCTGATCG GAGAGGCGGC GCCGTCTTTC GCGGCGACCC TCGGCGAGGC AGTGCCCTAC GAAATCTCGG GGACATTGGA AAAAGCGGTT GCGCATGCGG CATCGGACGC GGCGCGCGAT GCCGGGGCGC CGGCGACCGT GATGCTTTCC CCGGCTTGCG CAAGCTTCGA CCAGTATAAG AACTTCGAAC TGCGCGGAGA TGCCTTCGTC GAGCACGTGA AGGCGCTCGA GGGCGTGATC ATGCTCATCT GA
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Protein sequence | MIPVTSFKGR KVALFGLGGS GLATAQALVA GGADVVAWDD NPDSVAKADQ AGIATADLRG EEWHAFSALV LSPGVPLTHP KPHWSADLAH HAGVEIIGDV ELFVRERRKH APDCPFIAIT GTNGKSTTTA LIAHILRASG RDTQLGGNIG TAVLTLEPPQ ADRFYVVECS SYQIDLAPTL DPTAGILLNL TPDHLDRHGT MQHYADIKER LVAGSGTAIV GVDDSLSSLI ADRVERAGTK VVRISRRHPL AEGVYAEGTA LMRATGGASS LFTDLAGIQT LRGGHNAQNA AAAIAACLAV GISEKDIVDG LRSFPGLKHR MQPVAKKGET IFVNDSKATN AEAAAPALSS YDRIYWIAGG LPKEGGITSL TPFFPKIVKA YLIGEAAPSF AATLGEAVPY EISGTLEKAV AHAASDAARD AGAPATVMLS PACASFDQYK NFELRGDAFV EHVKALEGVI MLI
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