| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2073 |
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| Symbol | lpxC |
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| ID | 5322932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2127249 |
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| End bp | 2128202 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640791010 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
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| Protein accession | YP_001327741 |
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| Protein GI | 150397274 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
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| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.974641 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00232329 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGAATCG AACTGCTCGG GTTTCAGACA ACGATTGCAA ACCCGATAAC CCTCAAGGGT
ATTGGCGTTC ACTCCGGGTC GGAAGTCGAG ATTACCTTCC ACCCGGCTGA TGCCGATGCC
GGCATTGTTT TCCAGCGGGT GCTCGCTGGC GGGCGGCTCA GCGAGTTCCG GGCCGTCTCG
TCGCATGTCG GCAATACCGA TCTCTGCACC GTTCTAGGTC TGTCGCCCTC GACGTCGATC
GCGACGATCG AGCATGTCAT GGCAGCGGTC TATGCACTCG GCCTCGACAA CCTGCTGATC
GAAGTACATG GCGCCGAAAT GCCGATCATG GATGGCAGCT CCGCGCCCTT CATCGAAGCG
ATCGAGCAGG CAGGCGTTCA CTCGCTCCCG GAGAAGCGCC GCTATATCCG TATACTCAAG
CCGGTGCGCA TCGAATCGGG TGCATCCTGG TCCGAGTTCA CGCCCTATGA CGGCATGCGC
TTTGAAGTCG AGATCGATTT CGATTGCCCG CTCATCGGCC GGCAATCCTG GAAAGGCGAT
ATGACACCGT CGGTTTTCAA GCGGGAATTG TCGCGGGCGC GTACTTTCGG TTTCATGCGG
GATGTGGAGC GACTTTGGGC CGGGGGGTTC GCACTCGGCT CGTCGCTCGA GAATTCCGTG
GTGATCTCGG ATGACAATAC GGTCATCAAT GTCGAGGGTC TGCGTTATAC GGACGAGTTC
GTTCGCCACA AAACGCTTGA TGCCGTAGGC GATCTTTCTT TGGCGGGTGC GCCCTTCCTT
GGCTGTTACC GCTCCTATCG CGGCGGGCAC CGGATGAATG CCAATGCCCT AAAGGCATTG
CTCAGCGATC CGACCGCCTA TGAAGTCGTG GAAACGGCGA CGCCGCGCCA GCGCACGCGT
CCAAGGGATA TGGTGGCGGT GGCCGCGCCT GGCTTCGCTC CCTGGTCTGC CTGA
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| Protein sequence | MGIELLGFQT TIANPITLKG IGVHSGSEVE ITFHPADADA GIVFQRVLAG GRLSEFRAVS
SHVGNTDLCT VLGLSPSTSI ATIEHVMAAV YALGLDNLLI EVHGAEMPIM DGSSAPFIEA
IEQAGVHSLP EKRRYIRILK PVRIESGASW SEFTPYDGMR FEVEIDFDCP LIGRQSWKGD
MTPSVFKREL SRARTFGFMR DVERLWAGGF ALGSSLENSV VISDDNTVIN VEGLRYTDEF
VRHKTLDAVG DLSLAGAPFL GCYRSYRGGH RMNANALKAL LSDPTAYEVV ETATPRQRTR
PRDMVAVAAP GFAPWSA
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