| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2071 |
|---|
| Symbol | |
|---|
| ID | 5322930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 2124395 |
|---|
| End bp | 2126068 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640791008 |
|---|
| Product | DNA repair protein RecN |
|---|
| Protein accession | YP_001327739 |
|---|
| Protein GI | 150397272 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.240609 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00158855 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCCC AGCTCGCGAT CCGAGATATC GTCCTGATCG AACGGCTTGA CCTCAGCTTC
GATGTCGGGC TGTCGGTGCT GACCGGCGAA ACCGGTGCGG GCAAATCCAT TCTCCTCGAC
AGTCTGTCGC TTGCGCTGGG CGGGCGCGGC GACGGTTCGC TCGTGCGCCA TGGCGAGGAC
AGGGGCCAGG TGAGCGCCGT GTTCGATGTC CCGGCCGGTC ATTCGGCGCG GCTCCTTTTG
CGGGAAAACG GCATTGATGA CGATGGCGAT CTGATCTTCC GTCGCGTGCA GTCGGCGGAC
GGCCGCACCA AGGCCTTTAT CAACGATCAG CCGGTCAGCG TGCAGCTGAT GCGCCAGGTC
GGCCAGACGC TTGTTGAAAT CCATGGCCAG CATGACGATC GAGCGCTCGT CGATACCGAC
GCGCACCGCA CGCTCGTCGA TGCTTTTGGC GGCACCACCG ATGCGGCGGA AGCGGTCGCG
AACCTTTACC GCGCCTGGAA GGATGCCGAG CGGGGGCTGA AGAAACATCG GGAGAAGGTG
GAGGCCGCAT CCCGGGAGGC GGACTATCTC CGCTCCTCCG TCGAGGAGCT CGAGACACTA
TCGCCGCGCG ATGGCGAAGA GGAGGAGCTG GCGGAGAGCC GCGCCCGCAT GATGAAGGTC
GAACGCATCG CCGGCGATAT CAGCGAGGCA GCCGAGTTTC TGAACGGCAA TGCATCGCCT
GTTCCGCTCA TCGCATCGCT CGTCCGGCGG CTGGAGCGCA AGAGCCATGA GGCTCCCGGC
CTCCTTGAAG AGACCGTCGA ACTTCTGGAC GGTGCACTGA ACCAGCTTGC GGATGCCCAG
ATGGCGGTCG AGCGCGCGTT GCGCAACACC GAGTTCGATC CCAAGGAGCT CGAACGCGTC
GAAGAGCGGC TTTTCGCATT GCGCGCAGCG GGCCGGAAAT ACTCCGTCCC CGTCACCGAA
TTGCCCGCCC TTGCCGTGCG GATGATCGCC GATCTCGCCG ATCTCGATGC AGGCGAGGAG
AAGCTGCAGC AACTCGAGGT ACGGGTCGGC GAATGCAAAG CGGCGTTTGA CGCTGCATCG
CAGTCGCTGT CGGAAAAGCG GCACAATACG GCCGTTGCAC TTTCGGCGGC CGTTATGGAA
GAACTGCCGG CGCTGAAGCT GGAACGCGCC CGCTTCATGG TGGAGGTGAC GAGCGATCCG
GAATCGCCTA CGGCCGACGG GATCGACTCA GTCGAGTTCC ACGTACAGAC CAATCCCGGC
ACCAGGCCGG GACCGATCAT GAAGGTGGCT TCGGGCGGCG AGCTTTCGCG GTTCCTGCTC
GCGCTGAAAG TGGCGCTTGC CGACCGGGGT TCGGCGCCGA CTCTCGTCTT CGACGAGATC
GACACGGGTG TTGGTGGTGC CGTGGCAGAT GCGATCGGTC AGCGCCTGAA ACGCCTTTCG
AAGACCGTCC AGGTGCTTTC GGTCACCCAT GCGCCGCAGG TTGCCGCGCG TGCGGCCACG
CATCTCCTGA TCTCGAAGGG TCCCTCGGCG GAAAAAGCCG AGATGATCGC GACTCGCGTC
GCTCGCATGG ACGATGCGGC ACGCACCGAA GAGATAGCCC GTATGCTGGC AGGGGCCTCG
ATCACCGAAG AGGCGAGGGC CGCGGCTGCG CGATTGCTCG CCGGCAATGC CTGA
|
|---|
| Protein sequence | MLAQLAIRDI VLIERLDLSF DVGLSVLTGE TGAGKSILLD SLSLALGGRG DGSLVRHGED
RGQVSAVFDV PAGHSARLLL RENGIDDDGD LIFRRVQSAD GRTKAFINDQ PVSVQLMRQV
GQTLVEIHGQ HDDRALVDTD AHRTLVDAFG GTTDAAEAVA NLYRAWKDAE RGLKKHREKV
EAASREADYL RSSVEELETL SPRDGEEEEL AESRARMMKV ERIAGDISEA AEFLNGNASP
VPLIASLVRR LERKSHEAPG LLEETVELLD GALNQLADAQ MAVERALRNT EFDPKELERV
EERLFALRAA GRKYSVPVTE LPALAVRMIA DLADLDAGEE KLQQLEVRVG ECKAAFDAAS
QSLSEKRHNT AVALSAAVME ELPALKLERA RFMVEVTSDP ESPTADGIDS VEFHVQTNPG
TRPGPIMKVA SGGELSRFLL ALKVALADRG SAPTLVFDEI DTGVGGAVAD AIGQRLKRLS
KTVQVLSVTH APQVAARAAT HLLISKGPSA EKAEMIATRV ARMDDAARTE EIARMLAGAS
ITEEARAAAA RLLAGNA
|
|---|
| |