Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2030 |
Symbol | |
ID | 5322889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2074733 |
End bp | 2078473 |
Gene Length | 3741 bp |
Protein Length | 1246 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640790967 |
Product | hypothetical protein |
Protein accession | YP_001327698 |
Protein GI | 150397231 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0479736 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTGGCGC GAATACTGGT TACCCTCGGC GGACTGTTGG TTGTCGCGCT CTTTGCCGCG CTGATCGCAC CCCTTTTTAT CGACTGGACC AGTTTCCGTA ACGATTTCGA GCGGGAGGCA AGCCGCATCA TGGGCAAGCC CGTGGTGGTC CATGGCAGCG TCGATGCGCG TCTTATCCCG TTTCCCACCG TCACGCTCAA CGACGTGCGC GTCGGATCCA GCGATGGCGG CCCGCCGCTG ATCCAGGTTG CCCAATTTTC GATGAGTGCC GAGCTTGCGC CGTTCCTGAG CGGCGAGGCG CTGATCTTCG ACATGCGGCT GGACCGGCCG AAGGCGCGGA TACGCCTCCA GCCGGACGGC ACGCTGGATT GGGCGCGGGG ATCGCGCACG GCGATCCCCG CGCATACGGT CATACTGGAG AAAGTGGAGA TCGCCGACGG CGAGATCGAG TTCGTGGACG AGCAGACGGG GCGCACGCGC CGGGTCAGCG ATCTCTCCGC CGATCTCTCC GCCCGCACCC TGGCTGGACC ATGGAGGGCC GAAGGCCGTG CGGCGCTTGA CGGTGAGGTG GGCAGCTTCT CGTTCACGAG CAATGCCGTC GATGAAACGG GAGCCTTGAG CCTTCGGGCG CGTCTGGTGC CGGACGAACG GCCCTTCGGC GTGGAGCTCG ACGGCAGTCT GAAAGTCGTC GATTTCCGGC CGGTCTATGC CGGCCGCTTC ACCCTCACGG AGAATCGGCC AGCCAACGAG GTGAAGGCGG ACGGCGCACT GCGCATCAAC GGCGAGTTCC AGCTCACCAA CGAAAGCATC CGCGTACCGG AATATCATTT CGAGATCGGG CCGCCCGACG ATCCCTATAT CGTCACCGGC GAGGCGACGC TCGATACAGG CAAGGACCAG AGGTTCCTGT TGATTGCCGA CGGTCAGCAG ATCGATGTCA GCCGCATCGG CAACTCCGGC AGCAGCGGCA AAACCGGGCG CGACCCAGCC ATTTCGCTCC GCCAGCGGAT CGACGCGATG TTGGCGATCG CGGCCGATAT TCCGATTCCG CAGGTGCCGG GGCGGGCCAG CCTGAAGCTC CCGGCAATCG TTATCGGCGA TACGACGGTG CGCGACGTCC GCCTCGATGT GAGGCCGGAC GGCGCCGGCT GGATCGTCGA CAATGCCGTC GCATTGCTGC CCGGTCGGAC GCTACTGGAA GCCAAGGGAC GGCTGAACCT CAAAGAACAT CGATCATTCC GCGGCGACCT CGTCATCGCC TCCAACCAGC CGTCTGGCTT CGCGAACTGG CTGGCGGGAT CGGTCGATCC GGCGATACGC ACGTTGAAAA CGGCCGGTTT CTCCGCGACC GTCAATCTGA CCGACACTCT GCAGCAGTTT GAAAGTCTCG AAGTGGCGGC CGGTCCAGCG ACGCTGCGCG GCAGGATCGA GCGCCAGTCC TTCGCCGATC AGCCGCCCGC TTTGTCCATG CAGTTGAAAG GCAACCACAT AGACCTCGAG GCGCTTCAGG CCCTGGCCGG GCTGGTCGCC GGCGATGCTT CCACAGGGAC GTTGCTGCAG CACTCGATCG CCGCCGACCT TTCCGCCGAG ACGTTCTCCG CCTTCGGTGA GGAAGCACGT GATGTCCAAG CAGTGCTTAC CTTGAAGAAC GGTCAGCTGC AGGCCGAGCG GGTCGCGATC CGGGCACTTG CGGGCGCACA GCTCGCATTT TCCGGCCGGA TGAGCGGTGG GCTCGAAAAG CCGGTCGTCT CGGCGAAGAT GAAGCTTGCC GCCGAAGAGC TTACACCCTT TCTCGAAATG ATCGGACGGC ACAGCACGGC CCATCCGGCC TTGGCACGGC TTATCAAAGC TGGCTCCTAT TACTCCGACG CCGCGCTCGA CCTCACCCTG ACGGCCGGAA ACAAGGAGGG TAATGCACCG GTCACCTTTG GCGTGATCGG TACCGCCAGC GGAGGCAGGA TAGCCGGTAG CTACCAGGCA CCCGATGTCG CGCAGGCACT TTCCGGTCAG GGCATGCTGC TGGAGGCCAC GCTCGAAAAT CCGCGAACGG CCGTTCTGCT GGGGCAGGCC GGTCTGGATC CGCTACCCTT CGAAGCGGAC GCCAACGGTA TTCTTGCCAT CAAGCTGCAG AGTACCGAGG GCTCCAAGGC CAACGGCGCC CTGAGCTTCA CCACGGAGCG GACATCGCTT GCAGCAAACG GTGTTTTCGA TCTGTCGCGC GCGCATTATC TCGAAGGCCA GGGAAAGCTC ACCCTCAAAT CCGAGGATCT CGAGCCTTAT CTGCTGCTGC AAGGCATCGG GCTGCCGCAG ATGGGCAGCG GCTTGCCGCT GACGGTCTCG GCTGAATTTT CAACCGATCC CGACAAGATT GCGATTACGG CAATCGAGGG CAGGGCAGAC CGGAATGGTT TTGCCGGTGC GCTTGCGATC GACCGCAAGG TTCCCGGCAA GGCCGAAGGG GAGCTGGCGC TCGATACTCT TGATCTCGCC TGGTTGGCAG AAGGCATTCT GGGACAGGTT CACGACACCA GTACCGGGGG ACTGGCGCTG GCACCGGTGG CGAAGCCAGC ATGGACCGGG CTCGACATGG CGGTCAACAT AAATGCGAAG CGGTTCTGGC CGGGTGTTTA CGACCCGGTT TCCAACTTTG CCGGGCGGCT GGAATGGAAG GGAGATGAAC TCGCCCTGAG CGATGCGACG GGGGACTGGC TGGGGGGCAA GCTCGAGGGA CGAATGCACT TCGGCAACGC CAACGGCTCG GGTTATCTGC GCTCCCGACT CGATCTCAAG GGTGCCGATC TTGCCGAAGC GGGTTGGGTG CGGGCAAACG GCCCCGTCGC GACCGGCCGC TTCGACCTTG CGGTTGCGAT GGAGGCTACA GGCGCAACGC CCGAGGCAAT GGCGCAATCG CTCAGTGGAT CGGGCACGGC GAGCTTCAAC GGGCTTACCC TGAACGGGGT CAATACCGCG GCGCTGCCGC AGCTGATGGC TGCGGCAGAT GCGATGAAGA CCGATATCTC GCCGGAGTCG ATCCGCAGGG CTGCAGAGAA CTTGCTCTTT TCCGGTCAAT CGGTGGTTGG CACGGTGAAA GTGCCCTTCG GCATAGCAGG CGGGACCGTG AGGGTTCAGA ACGTCGCAGC GGGCGACGGC AACGCCGCTT TCAGCGGCGA GGCATCTTTC GACCTGCCCG AAGGCCGGAT GGCCGGCACG ATCGATCTGA CCTTCCGCCC GGGCGAGGAG GCGCTGGCGG GGGCAGATCC GCGCGTCCGC TTCGGCTATG CCGGGCTGCT TTCATCGCCT GGCGTAACGG TTGACGTCAC CGAGCTTTCG AACTTCCTGT CGCTCAGAGC CTTCGAGCGC GAGCGCAGAC GGGTCGAAAT ACTGCAGGCG AATGTGCTCG AAAAGCAACG TCTGCGTCGC GAGGTCGCGC TCTACCGAGC GCGCGCGGCC GAGCGTGAGC AGCAGCGGTT GCGGACGATC GCGGAAGAGC GGCGCCGGCA GGCAGCGGCG GCAGAAGCGG CGCGGATGCG GGCCGAAGCG CAAGCGCGGG CGGCTGCCGC ACGTCGCGCC GAAGACGAGG AGCGGCTGAG GATGCGGCAA CTGCCCGCCC GCAGCATCGG TCGCCAGCAG GCGCCTGTCA CACCGCCGCA GGATGCCGGT ACCCGACAGC GTCAGAATGC TGGACCGCCA GCGGGTCAGG GTCTGAATTT CGATCTGCTT CCCGATATTA CGGTGCGGTA G
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Protein sequence | MLARILVTLG GLLVVALFAA LIAPLFIDWT SFRNDFEREA SRIMGKPVVV HGSVDARLIP FPTVTLNDVR VGSSDGGPPL IQVAQFSMSA ELAPFLSGEA LIFDMRLDRP KARIRLQPDG TLDWARGSRT AIPAHTVILE KVEIADGEIE FVDEQTGRTR RVSDLSADLS ARTLAGPWRA EGRAALDGEV GSFSFTSNAV DETGALSLRA RLVPDERPFG VELDGSLKVV DFRPVYAGRF TLTENRPANE VKADGALRIN GEFQLTNESI RVPEYHFEIG PPDDPYIVTG EATLDTGKDQ RFLLIADGQQ IDVSRIGNSG SSGKTGRDPA ISLRQRIDAM LAIAADIPIP QVPGRASLKL PAIVIGDTTV RDVRLDVRPD GAGWIVDNAV ALLPGRTLLE AKGRLNLKEH RSFRGDLVIA SNQPSGFANW LAGSVDPAIR TLKTAGFSAT VNLTDTLQQF ESLEVAAGPA TLRGRIERQS FADQPPALSM QLKGNHIDLE ALQALAGLVA GDASTGTLLQ HSIAADLSAE TFSAFGEEAR DVQAVLTLKN GQLQAERVAI RALAGAQLAF SGRMSGGLEK PVVSAKMKLA AEELTPFLEM IGRHSTAHPA LARLIKAGSY YSDAALDLTL TAGNKEGNAP VTFGVIGTAS GGRIAGSYQA PDVAQALSGQ GMLLEATLEN PRTAVLLGQA GLDPLPFEAD ANGILAIKLQ STEGSKANGA LSFTTERTSL AANGVFDLSR AHYLEGQGKL TLKSEDLEPY LLLQGIGLPQ MGSGLPLTVS AEFSTDPDKI AITAIEGRAD RNGFAGALAI DRKVPGKAEG ELALDTLDLA WLAEGILGQV HDTSTGGLAL APVAKPAWTG LDMAVNINAK RFWPGVYDPV SNFAGRLEWK GDELALSDAT GDWLGGKLEG RMHFGNANGS GYLRSRLDLK GADLAEAGWV RANGPVATGR FDLAVAMEAT GATPEAMAQS LSGSGTASFN GLTLNGVNTA ALPQLMAAAD AMKTDISPES IRRAAENLLF SGQSVVGTVK VPFGIAGGTV RVQNVAAGDG NAAFSGEASF DLPEGRMAGT IDLTFRPGEE ALAGADPRVR FGYAGLLSSP GVTVDVTELS NFLSLRAFER ERRRVEILQA NVLEKQRLRR EVALYRARAA EREQQRLRTI AEERRRQAAA AEAARMRAEA QARAAAARRA EDEERLRMRQ LPARSIGRQQ APVTPPQDAG TRQRQNAGPP AGQGLNFDLL PDITVR
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