Gene Smed_2030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2030 
Symbol 
ID5322889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2074733 
End bp2078473 
Gene Length3741 bp 
Protein Length1246 aa 
Translation table11 
GC content65% 
IMG OID640790967 
Producthypothetical protein 
Protein accessionYP_001327698 
Protein GI150397231 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2982] Uncharacterized protein involved in outer membrane biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0479736 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGGCGC GAATACTGGT TACCCTCGGC GGACTGTTGG TTGTCGCGCT CTTTGCCGCG 
CTGATCGCAC CCCTTTTTAT CGACTGGACC AGTTTCCGTA ACGATTTCGA GCGGGAGGCA
AGCCGCATCA TGGGCAAGCC CGTGGTGGTC CATGGCAGCG TCGATGCGCG TCTTATCCCG
TTTCCCACCG TCACGCTCAA CGACGTGCGC GTCGGATCCA GCGATGGCGG CCCGCCGCTG
ATCCAGGTTG CCCAATTTTC GATGAGTGCC GAGCTTGCGC CGTTCCTGAG CGGCGAGGCG
CTGATCTTCG ACATGCGGCT GGACCGGCCG AAGGCGCGGA TACGCCTCCA GCCGGACGGC
ACGCTGGATT GGGCGCGGGG ATCGCGCACG GCGATCCCCG CGCATACGGT CATACTGGAG
AAAGTGGAGA TCGCCGACGG CGAGATCGAG TTCGTGGACG AGCAGACGGG GCGCACGCGC
CGGGTCAGCG ATCTCTCCGC CGATCTCTCC GCCCGCACCC TGGCTGGACC ATGGAGGGCC
GAAGGCCGTG CGGCGCTTGA CGGTGAGGTG GGCAGCTTCT CGTTCACGAG CAATGCCGTC
GATGAAACGG GAGCCTTGAG CCTTCGGGCG CGTCTGGTGC CGGACGAACG GCCCTTCGGC
GTGGAGCTCG ACGGCAGTCT GAAAGTCGTC GATTTCCGGC CGGTCTATGC CGGCCGCTTC
ACCCTCACGG AGAATCGGCC AGCCAACGAG GTGAAGGCGG ACGGCGCACT GCGCATCAAC
GGCGAGTTCC AGCTCACCAA CGAAAGCATC CGCGTACCGG AATATCATTT CGAGATCGGG
CCGCCCGACG ATCCCTATAT CGTCACCGGC GAGGCGACGC TCGATACAGG CAAGGACCAG
AGGTTCCTGT TGATTGCCGA CGGTCAGCAG ATCGATGTCA GCCGCATCGG CAACTCCGGC
AGCAGCGGCA AAACCGGGCG CGACCCAGCC ATTTCGCTCC GCCAGCGGAT CGACGCGATG
TTGGCGATCG CGGCCGATAT TCCGATTCCG CAGGTGCCGG GGCGGGCCAG CCTGAAGCTC
CCGGCAATCG TTATCGGCGA TACGACGGTG CGCGACGTCC GCCTCGATGT GAGGCCGGAC
GGCGCCGGCT GGATCGTCGA CAATGCCGTC GCATTGCTGC CCGGTCGGAC GCTACTGGAA
GCCAAGGGAC GGCTGAACCT CAAAGAACAT CGATCATTCC GCGGCGACCT CGTCATCGCC
TCCAACCAGC CGTCTGGCTT CGCGAACTGG CTGGCGGGAT CGGTCGATCC GGCGATACGC
ACGTTGAAAA CGGCCGGTTT CTCCGCGACC GTCAATCTGA CCGACACTCT GCAGCAGTTT
GAAAGTCTCG AAGTGGCGGC CGGTCCAGCG ACGCTGCGCG GCAGGATCGA GCGCCAGTCC
TTCGCCGATC AGCCGCCCGC TTTGTCCATG CAGTTGAAAG GCAACCACAT AGACCTCGAG
GCGCTTCAGG CCCTGGCCGG GCTGGTCGCC GGCGATGCTT CCACAGGGAC GTTGCTGCAG
CACTCGATCG CCGCCGACCT TTCCGCCGAG ACGTTCTCCG CCTTCGGTGA GGAAGCACGT
GATGTCCAAG CAGTGCTTAC CTTGAAGAAC GGTCAGCTGC AGGCCGAGCG GGTCGCGATC
CGGGCACTTG CGGGCGCACA GCTCGCATTT TCCGGCCGGA TGAGCGGTGG GCTCGAAAAG
CCGGTCGTCT CGGCGAAGAT GAAGCTTGCC GCCGAAGAGC TTACACCCTT TCTCGAAATG
ATCGGACGGC ACAGCACGGC CCATCCGGCC TTGGCACGGC TTATCAAAGC TGGCTCCTAT
TACTCCGACG CCGCGCTCGA CCTCACCCTG ACGGCCGGAA ACAAGGAGGG TAATGCACCG
GTCACCTTTG GCGTGATCGG TACCGCCAGC GGAGGCAGGA TAGCCGGTAG CTACCAGGCA
CCCGATGTCG CGCAGGCACT TTCCGGTCAG GGCATGCTGC TGGAGGCCAC GCTCGAAAAT
CCGCGAACGG CCGTTCTGCT GGGGCAGGCC GGTCTGGATC CGCTACCCTT CGAAGCGGAC
GCCAACGGTA TTCTTGCCAT CAAGCTGCAG AGTACCGAGG GCTCCAAGGC CAACGGCGCC
CTGAGCTTCA CCACGGAGCG GACATCGCTT GCAGCAAACG GTGTTTTCGA TCTGTCGCGC
GCGCATTATC TCGAAGGCCA GGGAAAGCTC ACCCTCAAAT CCGAGGATCT CGAGCCTTAT
CTGCTGCTGC AAGGCATCGG GCTGCCGCAG ATGGGCAGCG GCTTGCCGCT GACGGTCTCG
GCTGAATTTT CAACCGATCC CGACAAGATT GCGATTACGG CAATCGAGGG CAGGGCAGAC
CGGAATGGTT TTGCCGGTGC GCTTGCGATC GACCGCAAGG TTCCCGGCAA GGCCGAAGGG
GAGCTGGCGC TCGATACTCT TGATCTCGCC TGGTTGGCAG AAGGCATTCT GGGACAGGTT
CACGACACCA GTACCGGGGG ACTGGCGCTG GCACCGGTGG CGAAGCCAGC ATGGACCGGG
CTCGACATGG CGGTCAACAT AAATGCGAAG CGGTTCTGGC CGGGTGTTTA CGACCCGGTT
TCCAACTTTG CCGGGCGGCT GGAATGGAAG GGAGATGAAC TCGCCCTGAG CGATGCGACG
GGGGACTGGC TGGGGGGCAA GCTCGAGGGA CGAATGCACT TCGGCAACGC CAACGGCTCG
GGTTATCTGC GCTCCCGACT CGATCTCAAG GGTGCCGATC TTGCCGAAGC GGGTTGGGTG
CGGGCAAACG GCCCCGTCGC GACCGGCCGC TTCGACCTTG CGGTTGCGAT GGAGGCTACA
GGCGCAACGC CCGAGGCAAT GGCGCAATCG CTCAGTGGAT CGGGCACGGC GAGCTTCAAC
GGGCTTACCC TGAACGGGGT CAATACCGCG GCGCTGCCGC AGCTGATGGC TGCGGCAGAT
GCGATGAAGA CCGATATCTC GCCGGAGTCG ATCCGCAGGG CTGCAGAGAA CTTGCTCTTT
TCCGGTCAAT CGGTGGTTGG CACGGTGAAA GTGCCCTTCG GCATAGCAGG CGGGACCGTG
AGGGTTCAGA ACGTCGCAGC GGGCGACGGC AACGCCGCTT TCAGCGGCGA GGCATCTTTC
GACCTGCCCG AAGGCCGGAT GGCCGGCACG ATCGATCTGA CCTTCCGCCC GGGCGAGGAG
GCGCTGGCGG GGGCAGATCC GCGCGTCCGC TTCGGCTATG CCGGGCTGCT TTCATCGCCT
GGCGTAACGG TTGACGTCAC CGAGCTTTCG AACTTCCTGT CGCTCAGAGC CTTCGAGCGC
GAGCGCAGAC GGGTCGAAAT ACTGCAGGCG AATGTGCTCG AAAAGCAACG TCTGCGTCGC
GAGGTCGCGC TCTACCGAGC GCGCGCGGCC GAGCGTGAGC AGCAGCGGTT GCGGACGATC
GCGGAAGAGC GGCGCCGGCA GGCAGCGGCG GCAGAAGCGG CGCGGATGCG GGCCGAAGCG
CAAGCGCGGG CGGCTGCCGC ACGTCGCGCC GAAGACGAGG AGCGGCTGAG GATGCGGCAA
CTGCCCGCCC GCAGCATCGG TCGCCAGCAG GCGCCTGTCA CACCGCCGCA GGATGCCGGT
ACCCGACAGC GTCAGAATGC TGGACCGCCA GCGGGTCAGG GTCTGAATTT CGATCTGCTT
CCCGATATTA CGGTGCGGTA G
 
Protein sequence
MLARILVTLG GLLVVALFAA LIAPLFIDWT SFRNDFEREA SRIMGKPVVV HGSVDARLIP 
FPTVTLNDVR VGSSDGGPPL IQVAQFSMSA ELAPFLSGEA LIFDMRLDRP KARIRLQPDG
TLDWARGSRT AIPAHTVILE KVEIADGEIE FVDEQTGRTR RVSDLSADLS ARTLAGPWRA
EGRAALDGEV GSFSFTSNAV DETGALSLRA RLVPDERPFG VELDGSLKVV DFRPVYAGRF
TLTENRPANE VKADGALRIN GEFQLTNESI RVPEYHFEIG PPDDPYIVTG EATLDTGKDQ
RFLLIADGQQ IDVSRIGNSG SSGKTGRDPA ISLRQRIDAM LAIAADIPIP QVPGRASLKL
PAIVIGDTTV RDVRLDVRPD GAGWIVDNAV ALLPGRTLLE AKGRLNLKEH RSFRGDLVIA
SNQPSGFANW LAGSVDPAIR TLKTAGFSAT VNLTDTLQQF ESLEVAAGPA TLRGRIERQS
FADQPPALSM QLKGNHIDLE ALQALAGLVA GDASTGTLLQ HSIAADLSAE TFSAFGEEAR
DVQAVLTLKN GQLQAERVAI RALAGAQLAF SGRMSGGLEK PVVSAKMKLA AEELTPFLEM
IGRHSTAHPA LARLIKAGSY YSDAALDLTL TAGNKEGNAP VTFGVIGTAS GGRIAGSYQA
PDVAQALSGQ GMLLEATLEN PRTAVLLGQA GLDPLPFEAD ANGILAIKLQ STEGSKANGA
LSFTTERTSL AANGVFDLSR AHYLEGQGKL TLKSEDLEPY LLLQGIGLPQ MGSGLPLTVS
AEFSTDPDKI AITAIEGRAD RNGFAGALAI DRKVPGKAEG ELALDTLDLA WLAEGILGQV
HDTSTGGLAL APVAKPAWTG LDMAVNINAK RFWPGVYDPV SNFAGRLEWK GDELALSDAT
GDWLGGKLEG RMHFGNANGS GYLRSRLDLK GADLAEAGWV RANGPVATGR FDLAVAMEAT
GATPEAMAQS LSGSGTASFN GLTLNGVNTA ALPQLMAAAD AMKTDISPES IRRAAENLLF
SGQSVVGTVK VPFGIAGGTV RVQNVAAGDG NAAFSGEASF DLPEGRMAGT IDLTFRPGEE
ALAGADPRVR FGYAGLLSSP GVTVDVTELS NFLSLRAFER ERRRVEILQA NVLEKQRLRR
EVALYRARAA EREQQRLRTI AEERRRQAAA AEAARMRAEA QARAAAARRA EDEERLRMRQ
LPARSIGRQQ APVTPPQDAG TRQRQNAGPP AGQGLNFDLL PDITVR