| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1942 |
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| Symbol | |
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| ID | 5322801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1994093 |
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| End bp | 1995973 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640790880 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001327611 |
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| Protein GI | 150397144 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5616] Predicted integral membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.420919 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGATG AGAGAATACT CCCGAATGCG GCCCTCGCAA AGATTGCAGG CGAATCGGTC
GAGAACCTGT CAACTCATCG GATTTCGGTC ACACATGGCC AAGAGATGGA CGGCATGAGA
CGGCTGGCGG CGATCTTGGA CGCGGACGTC GTCGGCTATA GCCGGCTGAT GGGACTGGAC
GAAGCCGGCA CTTATCGGGC GGTCAAGCAT TGCCACAACG CCTTCATTCT GCCGTTGGTC
GAGGCCCATA ACGGCAGGAT CGTCAAGCAG GCGGGCGATG GAATGCTCGC AGAGTTCGCA
AGCGTACTCG ACGCCGTCGC TTGCGCCATC GCGATCCAAC GAACAATGCA CGATCAGGCC
GGGAGCGCGG AAACTGAGCG TCTGGAATTG CGCATCGGCG TCCACCTCGG CGATATCGTC
GCGGACGACG GCGATATTCA CGGCGAAGGC ATTGCCGTTG CCGGGCACCT TCAGGAAATG
GCGCCGCCCG GCGGCATCTG CGTGTCGCAG CAAGTCTATG ACCAGGTTTC CTCGAAACTG
GATATCCAGA TGGGAGACCT CGGCTGCAAG ACGTTTGCCG ATATTCCCGG CCCGCTGCAC
GTCTGGTGCT GGCAGCCGGG CGCAACACGG GAAGAATCGC CCGCACCAAA GCAGAACCGG
CCGCGTCCTG ACATGAAGCG GCCGTCGATC GCCGTCCTGC CATTCGTCAA CTTGTCGAGC
GTCGACGAAC AGGAGCATTT CTCCGACGGC TTCACGGAGG AGTTGATTTC CACCCTGGCC
CGATGCCGTT GGCTGCGCGT CGTCGCGCGC AACTCCTCCT TCACTTTCAA GGGGGTAACT
GTCGACGTGA GAAAGGTTGC GTCCGACTTG GGCGTTAAAT ACGTGATCGA GGGCAGCATA
CGCCGCGCGG CAAACCGGAT CCGCATCACG GCGCAATTGC TGAGCGGCGA AACCGGCATG
CTGCTCTGGG CAGAGCGCTA CGACCGCATG CTGGACGACG TTTTCGTGCT GCAGGATGAG
ATCGCGGGAC AGATCACCGG TACTGTGGAA CCCGAACTCG GCTTCATCGA ATTCGCAGCG
CTGCGCGGCC AAAGCGCGAC GGACATGGAT GCCTGGAATA TCTATCTCAA GGGGTTATGG
CACCTCTACA AGTTTGATCT TGAGAATCTG AGGATTTCCA AAGAGCTGTT CGAGCGAGCG
ATCGACCTCG AACCCGCTTT TGCCCAGGCC TATGCGCGCC TTGCTTATGT CCATATACAG
CTCGGCTGGT ATGGCCCTCT TGAGGAGCGG GGCGATCGGA TCGCCGACGC GACGGCGCTG
GCTGAACGTG CGACCGCGCT CGACGACCGT GAGCCGGCAG CGCATCTGGC ACTCGGCCGG
GCACGGGCAC TCGGCGGCCA GCCGGAGCGT GGGATCGAAC ACCTGCGCAA CGCACTGAGG
CTTGTCCCAA GCTTCGCCCA GGGCCACTTT GCTCTCGGGC AAGCGCTTTG TTATGTGGGC
CGCCCCGAAG AGGGCATCAC CGCGATCAAC GAGGCGTTCC GGCTGAGCCC TCGAGATCCG
CATCTGTGGA CGTTTCACAA CATGGTCGCC ATCGCCCAAT ACCAGGCGGG TCGCTTCGCG
CAAGCCGCCG AGGCGGCCCG CGCCTCTCTA CTCAAGGAAA ATGCCACGTT CTGGCCCGCA
ATGGTGCTGG CAGCGTCCCT CGGCGCCCAG GAGCGGAAGG GCGAGGCCCG CGCGGCGGTG
GCGGAGCTTT TGCGCCGGCG GCCGGACATG ACCGCGAAAA CGGCCCGCGC CGAATTCTAC
TTCGGCAGCG TGCCGGCCAT GTCCGAGAAA TTCATCGACC GCTTCGTCAG CGATCTGCAC
CGCGCCGGCG TGCCTGATTG A
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| Protein sequence | MLDERILPNA ALAKIAGESV ENLSTHRISV THGQEMDGMR RLAAILDADV VGYSRLMGLD
EAGTYRAVKH CHNAFILPLV EAHNGRIVKQ AGDGMLAEFA SVLDAVACAI AIQRTMHDQA
GSAETERLEL RIGVHLGDIV ADDGDIHGEG IAVAGHLQEM APPGGICVSQ QVYDQVSSKL
DIQMGDLGCK TFADIPGPLH VWCWQPGATR EESPAPKQNR PRPDMKRPSI AVLPFVNLSS
VDEQEHFSDG FTEELISTLA RCRWLRVVAR NSSFTFKGVT VDVRKVASDL GVKYVIEGSI
RRAANRIRIT AQLLSGETGM LLWAERYDRM LDDVFVLQDE IAGQITGTVE PELGFIEFAA
LRGQSATDMD AWNIYLKGLW HLYKFDLENL RISKELFERA IDLEPAFAQA YARLAYVHIQ
LGWYGPLEER GDRIADATAL AERATALDDR EPAAHLALGR ARALGGQPER GIEHLRNALR
LVPSFAQGHF ALGQALCYVG RPEEGITAIN EAFRLSPRDP HLWTFHNMVA IAQYQAGRFA
QAAEAARASL LKENATFWPA MVLAASLGAQ ERKGEARAAV AELLRRRPDM TAKTARAEFY
FGSVPAMSEK FIDRFVSDLH RAGVPD
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