| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1940 |
|---|
| Symbol | |
|---|
| ID | 5322799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1992090 |
|---|
| End bp | 1992758 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640790878 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_001327609 |
|---|
| Protein GI | 150397142 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.80655 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACATTC AGCATCTGCT TATGAGGATC GACGCCATCA GCGTCTGGAC CGGCAAGGCG
GCGGCGTGGC TGATCCTTGG GCTGATGCTG CTGGTCTGCG GCGAAGTCTT CAAGCGTTAT
ATCCTGAACA TGCCGACCGC CTGGATCTTC GACGCCAGCA ACATGCTCTA CGGCAGCCTG
TTCATGCTTG CAGGGGCCTA TGCACTGGCG CAGAACGCCC ACGTGCGGGG TGATTTCCTT
TACAGTGCGT TCAGGCCGCG CACACAGGCG GCACTGGACC TTATTCTGTA CATCCTCTTC
TTTCTGCCGG GCATCGCCGC CCTCATCTAT GCCGGTTACG ACTACGCCGC ATTGTCCTGG
CGGATCGGCG AACACTCGAC GGTCACGGCC GAAGGGCCAC CGCTTTATTT TTTCAAGACG
GTTATTCCTG TCGCCGGCGC GCTCGTCATA TTCCAGGGAC TTGCGGAGAT CCTGCGCTGC
ATCATCTGTC TCAAGACCGG GGCCTGGCCA GCCCGGCTGA AGGATGTCGA GGAGATCGAT
GTCGTAGCCG AGCAGCTAGC CCACAGCGAG CATCTCGACC AGGAAACGCG CGAGGCTGCG
TTGGAACGCG CGCAGGACAT CGACAGGGCA GCCCGGCAGC GCGGGCTCGG AGGGGAGAGC
CGTGAGTGA
|
|---|
| Protein sequence | MNIQHLLMRI DAISVWTGKA AAWLILGLML LVCGEVFKRY ILNMPTAWIF DASNMLYGSL
FMLAGAYALA QNAHVRGDFL YSAFRPRTQA ALDLILYILF FLPGIAALIY AGYDYAALSW
RIGEHSTVTA EGPPLYFFKT VIPVAGALVI FQGLAEILRC IICLKTGAWP ARLKDVEEID
VVAEQLAHSE HLDQETREAA LERAQDIDRA ARQRGLGGES RE
|
|---|
| |