| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1939 |
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| Symbol | |
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| ID | 5322798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1990358 |
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| End bp | 1992097 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640790877 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_001327608 |
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| Protein GI | 150397141 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.759969 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTGAAC CATTCCTTGG CCTGACCATG CTTGGTCTCA TCGTGGTCGT GATCATGATG
GGATTTCCAA CTGCCTTTAC GCTCATGGGG CTTGGAATGC TGTTCGGCTT CTACGCCTTT
TACAATCCGG CGGAACTCTG GATCGACAAT CGTATCTTCG ATCTCATGGT CCAACGCACC
TATGGAGCAA TGACCAACGA CGTGCTGATC TCAGTTCCGC TTTTCGTGCT GATGGGCTAC
GTAATGGAGC GGGGCGCGCT GGTGGACAAA ATGTTCTACA GCGTCCAGCT GTCGTTCCGG
CGCGTTCCAG CGTCGCTCGC CGTGACAACG CTCATCGTCT GCACCTTCTG GGGGATCGCC
AGCGGCCTGG TCGGCGCCGT GGTGGTGCTG ATGGGGGTGA TCGCCATGAA CCCGATGCTG
CGGGCGGGTT ACGATGTGAA GCTTGCCTCA GGCGTCATTA CTGCCGGAGG TACGCTTGGC
ATCCTGATCC CGCCATCGGT GATGATCATC GTCTATGCGG CGGTGGCCGG GCAGTCCGTG
GTCAAGCTGT ATGCGGCGAC GATGTTTCCA GGCTTCTTTC TGGCGCTTCT TTATCTCGCC
TATGTCCTCG GCTGGGCGAT GCTCAATCCG AAGATTGCGC CGAGCCTCCC GGAGGAGCAG
ACGCGCGTTC CAGTGCCGCC ATGGATGAAG CGATTCGCGG AACTCTATTC ACCCAACATG
CTCGCCGGAC TTCTCGTTGC TCTCGTCTCG CCATCACGCG CGCTCGGGAT CGAGGCCGGT
GAGGGACGGC TCACCTACTT CAAGATCATC AAGAACATTG TTGCAGCATG CGTTCCGCTT
CTCCTGACGG TGTCCACGTT CGGGCTTGTC TGGTGGTATG TCGTCATTCA TCAGCAGGCG
GCCGCGTCCG AGGCACCGGA GGGACTGGAA GAGCTGGGCG CGCCGGTAGC GGATGCCGGA
CCGGCGACCG TTGGCGGTCC CGCGACGGGA TTCTACATCT GGTTCGGCCT CGCTGCGGCG
GTCGCCGCCG TCCCGCTCGT GCGCTACTAT CGCAGGATGA CCGCCGAACG GCTTCAGGTG
GTGAAGCTTC TCGCTTCCTC CGTCATGCCG CTCGCGCTTC TGACGGTAAT CGTGCTCGCG
GTGATCCTGT TCGGCATAAC GACTGCGACG GAGTCCGCCG CTGTCGGTGC CGCGGGCGCC
TTCCTGCTGG CGCTGCAGGC ACGGACGCTC AACTGGCAGC GCACCAAGGA AGCGGTCTTC
CTGACTGCGA AGACCACTGC CATGGTCTGC TGGCTCTTCG TGGGTTCGGC CCTTTTCTCC
GCCGTTTTCG CGATCCTCGG CGGACAGGCA TTGGTCGAGC AATGGGTTCT CGCGCTTGAT
CTGACGCCGA TACAGTTCAT GATTCTGTCG CAGGCGATCA TCTTCATTCT CGGATGGCCG
CTCGAGTGGA CCGAGATCAT CATCATCTTC GTGCCGATTT TCCTCCCGAT GCTCCACCAC
TTCGACATCG ATCCGATCCT CTGGGGCGTG CTCGTCTTCG TCAACCTGCA GGCTGCGTTC
CTGTCGCCGC CGGTGGCGAT GTCGGCCTAC TATCTCAAGG GCGTGTCACC GCCGCAGGTG
ACCCTCAACC AGATCTTCGC AGGGATGATG CCGTACATGC TGATCGTCAT AGTCTGCATG
ATCATCATGT ATATCTGGCC GGGGATGACA CTCTGGCTGC CCGAATATCT CTACGGCTGA
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| Protein sequence | MSEPFLGLTM LGLIVVVIMM GFPTAFTLMG LGMLFGFYAF YNPAELWIDN RIFDLMVQRT
YGAMTNDVLI SVPLFVLMGY VMERGALVDK MFYSVQLSFR RVPASLAVTT LIVCTFWGIA
SGLVGAVVVL MGVIAMNPML RAGYDVKLAS GVITAGGTLG ILIPPSVMII VYAAVAGQSV
VKLYAATMFP GFFLALLYLA YVLGWAMLNP KIAPSLPEEQ TRVPVPPWMK RFAELYSPNM
LAGLLVALVS PSRALGIEAG EGRLTYFKII KNIVAACVPL LLTVSTFGLV WWYVVIHQQA
AASEAPEGLE ELGAPVADAG PATVGGPATG FYIWFGLAAA VAAVPLVRYY RRMTAERLQV
VKLLASSVMP LALLTVIVLA VILFGITTAT ESAAVGAAGA FLLALQARTL NWQRTKEAVF
LTAKTTAMVC WLFVGSALFS AVFAILGGQA LVEQWVLALD LTPIQFMILS QAIIFILGWP
LEWTEIIIIF VPIFLPMLHH FDIDPILWGV LVFVNLQAAF LSPPVAMSAY YLKGVSPPQV
TLNQIFAGMM PYMLIVIVCM IIMYIWPGMT LWLPEYLYG
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