Gene Smed_1938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1938 
Symbol 
ID5322797 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1989467 
End bp1989847 
Gene Length381 bp 
Protein Length126 aa 
Translation table11 
GC content63% 
IMG OID640790876 
Productputative signal peptide protein 
Protein accessionYP_001327607 
Protein GI150397140 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4961] Flp pilus assembly protein TadG 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.608545 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGGCCG CGACGTTCTG CCTGCATATG AGAAGGCTGA TGCGCGACAG GGAAGGCAAC 
TTCGCCGTTC TGGGCGCTAT CGCATTCATT CCGATCATCG GCGCGGCTGC CCTGGCGATC
GACTTCGCCG GGGCCTACTT CGAAGCGGAG AAGATCCAGA GCGCCCTCGA TGCGGCGGCG
CTCGGTTCGG TCCGGGCTTA TGGCGAGGGC GCCACCGAGG AGGAAGCCTA TGATGCGGCC
CAAAAATTCT TCTGGAGCAA CTACGCGCTG CCTCAGGAAA GCGTCGTCGA CGCCCTGAGT
GCTGCAACGG AAGCTTCCAC GCAGGCGCTT CCCCGATGCT GCCGAACTCC AATATGCGGG
CAATGGTGCG ACCAGCGGTG A
 
Protein sequence
MRAATFCLHM RRLMRDREGN FAVLGAIAFI PIIGAAALAI DFAGAYFEAE KIQSALDAAA 
LGSVRAYGEG ATEEEAYDAA QKFFWSNYAL PQESVVDALS AATEASTQAL PRCCRTPICG
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