Gene Smed_1918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1918 
Symbol 
ID5322776 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1976224 
End bp1976940 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content57% 
IMG OID640790855 
Productputative phage repressor 
Protein accessionYP_001327587 
Protein GI150397120 
COG category[K] Transcription 
COG ID[COG2932] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.514362 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGACC CACAATATGA ACTGAAACAA TGGCTTGCAG AAAAACTCGC GGCTCGCGGC 
GTGGCTTCGA AACTCGCCGA AGCTACGGGT ATGTCCAACG ACAAGATCAC GCGGTCAAAA
GAACTGCACA GCGACGATCC TAAGAAGCGC CGTCAGATAT CTCTCCAAGA GATAGAGGCG
ATGGCGAGAT TCTTTAGGGA ATTGCCGCCT GGCTTCGAAC AAATGACGCG TTGGTTAGAG
GATCTGTCCC CCGCCCCCAC GGCCAAGCCG ATACCAAACG CCAGCTTCCC GCCGCGCTGG
CAGCAATTCC CCGGCGATGC TTCGATTCCG CTTCGAGGGC ACATTGCCGC CGGAGCCAAC
GGTCGGTTCA TTATGAACGG TCAGGATATC GCCACGGTTT TTTGTCCGCC CGGCCTCGAG
GGCGTTGAGG GCGCGTATGC CGTGCAGGTC GACGGCCGCT CCGGCGAGCC ACGCTTCCTT
CACGGCGAGA CCGCGTGGGT GAACCCTCAT CAGAAGGTCC GACAGGGCGA CGATGTCGTA
GTGCAGATCC TGGAAGACGA TGAGCTATCA AGCTACCTCA AGCGGTTCGT TTCCAGATCC
GCCGATGTGC TTCGCCTCTA CCAGTACAAC CCCGGCAAAG GCGAAAGCCA CGATCTGGAG
TTTCCTACGG ACAAAGTTTT CAGCGTCCAC AAAGTTGTGT TTCATGCGAT GCTTTGA
 
Protein sequence
MSDPQYELKQ WLAEKLAARG VASKLAEATG MSNDKITRSK ELHSDDPKKR RQISLQEIEA 
MARFFRELPP GFEQMTRWLE DLSPAPTAKP IPNASFPPRW QQFPGDASIP LRGHIAAGAN
GRFIMNGQDI ATVFCPPGLE GVEGAYAVQV DGRSGEPRFL HGETAWVNPH QKVRQGDDVV
VQILEDDELS SYLKRFVSRS ADVLRLYQYN PGKGESHDLE FPTDKVFSVH KVVFHAML