| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1874 |
|---|
| Symbol | |
|---|
| ID | 5322732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1945435 |
|---|
| End bp | 1948092 |
|---|
| Gene Length | 2658 bp |
|---|
| Protein Length | 885 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640790811 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001327543 |
|---|
| Protein GI | 150397076 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.556351 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATCT TTACAGGAAT CGCCACGGCG ATCGCCGGCG CGCTGTTCGG CGGCTCTACG
CTTGCCACCA GCCTGATCGG CGGCGCGCTC GCCTTCGGCG CGAAGTTTGC CGTGGGCAAG
CTCACCCAGC AGAGACAGGG CAAGCAGAAG CACACGGCCG TCCAGGGCGA GATCCAGTTC
GGCGGCGACG TGCCGGTCGG CACTCTCTAC GGCGTCGGCA AGACCAAGGG CCAGCGCGCC
TTCTATGCCA AGTGGGACAA GGGCAACAAG CGCAATGCCG AAGTCTTCAT CCTCGCCAAC
GGCTGGTGCG ACGGGCTGGA GCCGTACGTC TATATTTATG GCGAGAAATA CAATCTCGTG
GCGCAGGCGA CGATCGGCAA CGAGGTCGCG CGTTACGGCG TCCAGGGCTT CATCGACGGC
GACGGCAACA GCGCGATCTC GATCCGCTTC TATGACGGCC GCCCGGGACA GGGCGTCGAT
CAGCGCCTCG TCGATGTGAC GGCCAACCTC GGCAATAAGT GGAAGGCGAC CAGCAAGCTT
TCGGGCATGT GCTATGTCGT CGTCGAGCGC TACTATCACC TCGAATTCTT CCGTGACGCC
GGCAAGGGCA AGCCGGACAT CGATTTCGTG CTGCGCGGGC TTCGCGAATA CGACCCGCGT
AAGGACTCGA CGGTTGCCGG TGGCTCCGGG ACGCAGCGGC TCACCATGCC CTCGACCTGG
GTGCACACGA AAAACCCGGC CTTGCACCGG CTGAACTACC AGCTGGGCCT TCGCGCGCTG
GTCTCTGGCC GCACGCTGAT CGGCGAGGGC AAGAGCCTCG GCCAGATCGA TCTCGCCACC
TATTTCGTGG CGATGAACGT CTGCGACACT CTGCGCAGCA ACGGCAAGAA GACCTATGAG
TGCTCTGTCT TCGTCAGTGG CGACGATGAT CACACCGAGG TGCTGAAGCA GTTTGATGAC
GCGATGGCCG GCTATGGGCT TAACCGCCGC GGCCTTTCCG GCGTCATTCC CGGTGCACCG
CAGATCCCGG TCAAGGACCT GACTGCAGCC GACATCCCGA TCGACCGCGC CAAGGACGTG
CAGTTCCGGC CTTCGGCTTT CGAGCGCTTC AACCACCTTT CCGGCCAGTT CACCTCGATC
GAGTCGATGT GGAACCCGGA GAGCCTGAAG CCGGTCTATG TGAATGCGGA CATCGCCGCC
GACGGCCGTA ACCGGCAGAC GAGCATCGAT TTCCTGCAGG TGACCGATCC GGACATCGCG
CAATATCTGC TCAATATCCG CTATCGGCAG AACCGCATGG GCGGCAAGGC GACGGTTCCC
GTCAGCCGTC GCTTTGGTCT GGCGGTACAG GAAGGCGAGT GGATCACCTG GCGTGGCAAG
ACCTGGCTGA TCAGTGAATG GCGGGCGGAC GAGCGGCTGC GCATCACGCT GGTGCTTTCG
GAGACCAGTG CGGCGATCTA TGACGACGAC GGCATCGAGC CCGGCCCAAT CGTCGTGCCG
CCGACGCCGC CGATCAATCC GTCGCTGCTC TCGACCGTGC AGAACTTCAA TGTTGCCGTC
GGCATGATCA ACGGCGCGCA GGGCTATGAT ACGCCGGCGC TCGTCTTCAC CTGGACGCCG
CCGGATGATC CGACAATCAC CGCCGTGCGT TTCGTCTACC AGATCGAGGG CACGACAGAG
ATCTTCGAGG ATCAGTGCAC CTCGCCCGAG GACGGCAGCT TCCGCACCAC GAAGAACGTC
GTTTCCGGCA AAGTCTATAA CGCCCGGGCG ACGATCACGA CCGTGCCCGA CCGGCTGCGC
ACCTTCACGC CCTGGATGAC GACGGCGCAG CCGACCGGCT TGCAGACGCT GCTGACCGGC
TTGCAACAGC TGCAGGACGA TGCGCTGAAC CGCTTCAAGG AACTGCAGCA GGAGATGGAC
GAATTCTTCC GGCCGCGCCT GGTCGAGCTG CTGGATGCTT TCTCGCTTGA GGGTGCTGTC
GGACAGATCG AGCGCCAGCA GATCGTTGCC ACCATAGGTG ACGCGCTGGC GCAGATCACC
GAGGAGCGCC GGGTTCGCGT TTCCGAGAAC GAGGCGATGG CGCAGTTGCT CACCTACCTG
CAGGCGAGCC TCGGCGGCAC AAGTGCGCGG CTGATCACCG AGGAGACCGT GCGCGCAACG
ACGGACAGCG CCCTCGCAAG CTCGATCACA ACACTCGACG CTGAAGTCGA TGGCAACCTC
GCCCGCCTGA TCGCCGAGGA GACCGCTCGC GCAGACGGCG ACGGCGCGCT TGCGACCAGC
ATCAGCGGCG TGAGCGCTGA TTTCAACGGC CGGTTCGCAC AAGGGCTGGT GAAGTTCGAG
GCGGTCGCGG CGCCGACCGG CGTTGATGCC CGTTTCTCGG TGTTGCTGCG GACCGGGACC
AACCAGAGCT TCAAGGTGTC GGGTTTCTAT GTCGAGCTTT ACACCGAAGG CGGTGTGCAG
AAGTCGCGCA TGGCCGTGCA GGCGGATCAG TTCCTCGTCA CGTCAGGCAA CAGCCGCCAC
TACCCACTCG TCTTCGAAGA CGGAGAGTTG AAGCTGGCCG TTGCCAACAT CGGCACGGTC
AATGCCGGTC TTCTTCAGTC GCTGAACGGC AAAATGAAAA TCGACCTCAA CAACGGCACG
ATCGAGATCT TCAGCTGA
|
|---|
| Protein sequence | MAIFTGIATA IAGALFGGST LATSLIGGAL AFGAKFAVGK LTQQRQGKQK HTAVQGEIQF
GGDVPVGTLY GVGKTKGQRA FYAKWDKGNK RNAEVFILAN GWCDGLEPYV YIYGEKYNLV
AQATIGNEVA RYGVQGFIDG DGNSAISIRF YDGRPGQGVD QRLVDVTANL GNKWKATSKL
SGMCYVVVER YYHLEFFRDA GKGKPDIDFV LRGLREYDPR KDSTVAGGSG TQRLTMPSTW
VHTKNPALHR LNYQLGLRAL VSGRTLIGEG KSLGQIDLAT YFVAMNVCDT LRSNGKKTYE
CSVFVSGDDD HTEVLKQFDD AMAGYGLNRR GLSGVIPGAP QIPVKDLTAA DIPIDRAKDV
QFRPSAFERF NHLSGQFTSI ESMWNPESLK PVYVNADIAA DGRNRQTSID FLQVTDPDIA
QYLLNIRYRQ NRMGGKATVP VSRRFGLAVQ EGEWITWRGK TWLISEWRAD ERLRITLVLS
ETSAAIYDDD GIEPGPIVVP PTPPINPSLL STVQNFNVAV GMINGAQGYD TPALVFTWTP
PDDPTITAVR FVYQIEGTTE IFEDQCTSPE DGSFRTTKNV VSGKVYNARA TITTVPDRLR
TFTPWMTTAQ PTGLQTLLTG LQQLQDDALN RFKELQQEMD EFFRPRLVEL LDAFSLEGAV
GQIERQQIVA TIGDALAQIT EERRVRVSEN EAMAQLLTYL QASLGGTSAR LITEETVRAT
TDSALASSIT TLDAEVDGNL ARLIAEETAR ADGDGALATS ISGVSADFNG RFAQGLVKFE
AVAAPTGVDA RFSVLLRTGT NQSFKVSGFY VELYTEGGVQ KSRMAVQADQ FLVTSGNSRH
YPLVFEDGEL KLAVANIGTV NAGLLQSLNG KMKIDLNNGT IEIFS
|
|---|
| |