Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1808 |
Symbol | |
ID | 5322666 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1890841 |
End bp | 1891650 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640790746 |
Product | putative transmembrane protein |
Protein accession | YP_001327478 |
Protein GI | 150397011 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.849383 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00211486 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACAAACA CCGTGCCTCA AGGCGCGGCG ATGCTGCTCG AGTTTATCCG CGAGGCGGAA GTCGGCAGCA GCGGCCGCGC GTCTTACGAC GTGATCTACG GACACAATCA GGGAGGGCTG GCGAAGCCGC TGACGGCAAT GACGGTTGCG CAGGTGCTTG CCGCGCAGAA GGGATGGTCC AAAGCGCATG GTTCGGGCGC TGCGGGCGCT TATCAGTTCA TGCGGGCCAC TTTGGCAGGG CTCCTGAAGG AGGTGGCATG GCTGCGCGGC GATCATCGGT TCGATGCCGC GCTTCAGGAC AGGCTGGCCC TTCACCTTCT GAACCGCCGC GGTCTTGCCG CTTTCCTCGC GGACGAAATA GGACGTGCGG AGTTTGCCAG GCGCCTAGCC ATGGAATGGG CGTCGCTGCC GGTGCTGACC GATAGCAAGG GAAGCCGGCA GCGGGTGAGG CGCGGACAGT CCTATTATGC CGGTGACGGG CAGAACAGGG CGCTGGTGCG GCCGGAGAGG CTGGAAGGGG TTCTTGGCGC GGCTCTGGCG GCGTCAAAGC AATTGGGTGA GGCAAACCGG GAGATCGAGG CGGCGCCTGT TGCTCCGGTG CGGACGCGCA AGCCGGTTTC CCGCTCCGGA CGCTTCTGGA CCTGGTTGCT GACCGCCGGC GGTACGATCC TCACTGCGCT GAAGGAACTG AACCTGGTGG CGCTGGACTG GCGGGTGCAA CTTGCCATTC TCGCAGCGAT CATCGGCTTT GCCGTTTACG CCATCTGGTC CATGCCGGCG GTTCGCGATG CACTGGGCCT CACGCGATGA
|
Protein sequence | MTNTVPQGAA MLLEFIREAE VGSSGRASYD VIYGHNQGGL AKPLTAMTVA QVLAAQKGWS KAHGSGAAGA YQFMRATLAG LLKEVAWLRG DHRFDAALQD RLALHLLNRR GLAAFLADEI GRAEFARRLA MEWASLPVLT DSKGSRQRVR RGQSYYAGDG QNRALVRPER LEGVLGAALA ASKQLGEANR EIEAAPVAPV RTRKPVSRSG RFWTWLLTAG GTILTALKEL NLVALDWRVQ LAILAAIIGF AVYAIWSMPA VRDALGLTR
|
| |