Gene Smed_1808 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1808 
Symbol 
ID5322666 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1890841 
End bp1891650 
Gene Length810 bp 
Protein Length269 aa 
Translation table11 
GC content65% 
IMG OID640790746 
Productputative transmembrane protein 
Protein accessionYP_001327478 
Protein GI150397011 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.849383 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00211486 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACAAACA CCGTGCCTCA AGGCGCGGCG ATGCTGCTCG AGTTTATCCG CGAGGCGGAA 
GTCGGCAGCA GCGGCCGCGC GTCTTACGAC GTGATCTACG GACACAATCA GGGAGGGCTG
GCGAAGCCGC TGACGGCAAT GACGGTTGCG CAGGTGCTTG CCGCGCAGAA GGGATGGTCC
AAAGCGCATG GTTCGGGCGC TGCGGGCGCT TATCAGTTCA TGCGGGCCAC TTTGGCAGGG
CTCCTGAAGG AGGTGGCATG GCTGCGCGGC GATCATCGGT TCGATGCCGC GCTTCAGGAC
AGGCTGGCCC TTCACCTTCT GAACCGCCGC GGTCTTGCCG CTTTCCTCGC GGACGAAATA
GGACGTGCGG AGTTTGCCAG GCGCCTAGCC ATGGAATGGG CGTCGCTGCC GGTGCTGACC
GATAGCAAGG GAAGCCGGCA GCGGGTGAGG CGCGGACAGT CCTATTATGC CGGTGACGGG
CAGAACAGGG CGCTGGTGCG GCCGGAGAGG CTGGAAGGGG TTCTTGGCGC GGCTCTGGCG
GCGTCAAAGC AATTGGGTGA GGCAAACCGG GAGATCGAGG CGGCGCCTGT TGCTCCGGTG
CGGACGCGCA AGCCGGTTTC CCGCTCCGGA CGCTTCTGGA CCTGGTTGCT GACCGCCGGC
GGTACGATCC TCACTGCGCT GAAGGAACTG AACCTGGTGG CGCTGGACTG GCGGGTGCAA
CTTGCCATTC TCGCAGCGAT CATCGGCTTT GCCGTTTACG CCATCTGGTC CATGCCGGCG
GTTCGCGATG CACTGGGCCT CACGCGATGA
 
Protein sequence
MTNTVPQGAA MLLEFIREAE VGSSGRASYD VIYGHNQGGL AKPLTAMTVA QVLAAQKGWS 
KAHGSGAAGA YQFMRATLAG LLKEVAWLRG DHRFDAALQD RLALHLLNRR GLAAFLADEI
GRAEFARRLA MEWASLPVLT DSKGSRQRVR RGQSYYAGDG QNRALVRPER LEGVLGAALA
ASKQLGEANR EIEAAPVAPV RTRKPVSRSG RFWTWLLTAG GTILTALKEL NLVALDWRVQ
LAILAAIIGF AVYAIWSMPA VRDALGLTR