Gene Smed_1802 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1802 
Symbol 
ID5322660 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1886411 
End bp1886974 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content59% 
IMG OID640790740 
Producthypothetical protein 
Protein accessionYP_001327472 
Protein GI150397005 
COG category[S] Function unknown 
COG ID[COG3803] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.796326 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.000766367 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTGGTTG GCGAAACCGA GATATGCACG CCGGAAGAGG TGCTGAAGTT CTGGTTTACG 
GAACTGTCCT ACGACCACTG GTTCACGCCG GATCCAGAGA TCGACCAGCG ATGCGCACAG
CGATTTCAAG CGTCGCATCT GGCCTTGTCC CGAAAGCTCG ACCATGCCTG GCGCGAGACG
CCGCATAACT GGCTCGCCGC CGTCATCCTT TTCGATCAGT TGCCGCGCAA CATGTATCGC
GGGTCGCCGC TGGCCTTTGC CACGGATTGC CTTGCCTTAC GCGAGGCGAA GCTCGCCATC
GGCGCGAGTG CCGATATGGC GGTACCCAGG GAATGGCGAA CTTTCTTCTA TATGCCCTTC
GAGCACTCCG AAAATCTGAC GGACCAGACC ATGTCGGTCA AGTTGTTCAC CGAACTTGGA
GACGCCAACT ACCTCGACTA TGCGATCCGA CATCGGGACG TGATCGAGCG TTTCGGCCGG
TTTCCCCATC GGAACGAAAT CGTGGCACGC ACTTCCTCAG CGGCCGAGGA GGAATATCTC
GCCCAGCCAG GCGCCGGATT CTAG
 
Protein sequence
MVVGETEICT PEEVLKFWFT ELSYDHWFTP DPEIDQRCAQ RFQASHLALS RKLDHAWRET 
PHNWLAAVIL FDQLPRNMYR GSPLAFATDC LALREAKLAI GASADMAVPR EWRTFFYMPF
EHSENLTDQT MSVKLFTELG DANYLDYAIR HRDVIERFGR FPHRNEIVAR TSSAAEEEYL
AQPGAGF