| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1800 |
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| Symbol | |
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| ID | 5322658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1883047 |
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| End bp | 1885626 |
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| Gene Length | 2580 bp |
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| Protein Length | 859 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640790738 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001327470 |
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| Protein GI | 150397003 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000387595 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCATCTCC TCGAAAATGT GAGGGCTTTT TCAATCGCCC TATTTCTCGG TTTGCTGGCT
CTCGGTGCGC TGACGCTCGC AGCCGACGGA CCCGCGGTTG CGCAGGAATC CGAGCCGAGC
GCTCGGCAAA GCCGGCCAGC AGAACCGGCA GTACCCATCC AGCCGGCCCA GTCCTCCCAG
CCCGCGCCGC AGGCTGCACC GACAGGACCC GCTGCGGGGA CCGGAGGCGA TCAGCCGTCT
GCCGCCGCAT CGCCGGTATT GCAGCAGGCG GAGGATCAGC TTGCCCAGGC GGATCGAGAG
CTGAAGCGGA TCACTGAGCG GACCAACGCC GTCGAAGACG ACGATGCCAT GCTCGCGGAA
CTCAGGGCGC AGGTCGACGA GCTTTCAAAG CAGATCATTG CGGCCTCTGT TCCCACCCGT
CCGAGGCTCG ATGAAATAAA GGCGAGGCTG ACGGAGCTCG GCGACCCGCC CGGTGAGGGA
CAGCCGCCGG AAGACGCGGT CATCACCGAT GAACGCAAAC GTCTCCTTGC CGAGCGTGGC
GCGATCAATG CTCTGACGGG GAGGGCGGAG AATCTCTCGA TCGAGGCGAG GAAACTTGCC
AACAGAATTA CCGCGACACG CCGGGCGATC TTCTCCAATA CCCTGCTGAG ACATACCGAT
GTTTCGGTAG AGATGTTGAG CGAGGCCGCC ACGGCAACGC TCCATGAAGC GATGGCCCTG
TCGCGAAGCA TCGGCGGGTG GCTGACATTC GCCTGGAACT ACAAACGCGT GCCTTTGCTG
AGCGCTCTCT TTCTCTCCCT ATGCGCGGCG CTGCTCTTTC TCGTTGGCGG TTACAGGCTT
TTTTCGCCAG TGCTGATGCG TCCCGAGGAG GCGGACGAGC CGACCTACTT CCGGCGGCTT
TCGCTGGCGT TCTGGTCGAC GCTCATTCCG ACCGTGGCAC TCGCCGCATT TGCCATGTCG
AGCTATTTCT TCCTCAGCAG CTTCAATATC CTGCGTCCTG ATATCGCGCC CATTATCGCG
ATCACACTTG CCATGGGCGT CGTACTGTTC TTCATAGCCA GGCTTGCCAG CGCCGTTCTG
TCGCCGAGCC GGTCGAGCTG GCGGCTTGTA CGTGTTTCGG ACCGTGGCGC GAAGATGTTG
ATGGTGCCGA TTTTTGCCAT GGCGCTCGTC AACGGCCTCG ACTATCTGCT CGGCAGCATC
AGCGAGTCTC TCGGCTCTCC GGTGGTGCTG ACGATTGCCA AGAGCTTCGT GGCATCTATC
ATCATCGGTC TCATTCTGAT GTCGATGGCG TGGATCCGGC CCGTGCTAAG GGGCGATGAG
CCCTATGATG CACCGGGACA TCCCTGGCCG CGGGTGATTT CGTTCTCCTT CCTTCTGCTT
GGTGCGGCCC TCATCGCGAC CGCTTTGTCG GGCTATGTCG GCCTGGCACG CTTCATCGCG
ACGCAGATCA CAGTGACAAG CGCGATCCTG GTCACTGTCT ATATCGGTCT CCTGACGGGG
AAGTCGGTGT CCAGACAGGG CGCTTTCGCC GAAACGGTTG CCGGGCGGTA TCTGGAACGC
CGCTTCCAGC TGGAGCCGGT CGCGCTCGAT CAGTTCGGCC TCTTTGCCGG CCTCGGCATC
TATGTGCTCG TTCTGGCGTT CTTCATCCCG CTCATATTGT TGCAGTGGGG CTTCAAGACC
GCCGACATCG AATCCTGGAC TTACCGTGTG CTGACGGAAA TCAGGGTCGG TACGATCACG
ATTTCGCTGG TTGGCATTCT CGCGGGGATA CTGCTCTTCG CACTCGGATT TCTCGTCACA
CGCTGGGTTC AGCGTTGGAT CGACCGCAAT GTCATGGCGC GTAGCCGGGT CGACGCAGGC
GTGCGCAACT CCATTCGTAC CGGAATCGGC TATATGGGTG TGGGCGTTGC CGGGCTTATC
GGCCTGTCCG CCGCAGGCAT TGATCTTTCG AGCCTAGCCC TGGTGGCCGG CGCTCTCTCC
CTCGGCGTCG GTTTCGGCCT GCAGAACATC GTCTCCAACT TCGTTTCCGG TCTGATCCTT
CTCGTGGAGC GTCCCTTCAA GGTAGGCGAC TGGATCGTCA GCGGCACGAC CGAAGGCTTC
GTGCGGCGTA TCTCCGTCCG CGCAACCGAA ATCGAGACCT TTCAACACCA GTCGATCATG
ATGCCGAACT CGTTGCTCAT CAACGCCTCG GTCGGAAACT GGACTCATCG GAACAAGCTC
GGCCGGTCGG AAATTGCAGT AACGGTTACC TATGACAGCG ACCCGCGGCG GATAATCGAA
CTGCTGCACG ACATCGCCGC GGCTCATCCG ATGGTGCTCA AAAATCCAGC CCCGAATGTC
GGCTTCACCG CCTTCGGCGA CGATCGAATG ACGTTTGAGT TGCGCATCTA TGTCGCTGAC
GTGCTGACGG CCGGTGGCGT GCGCAACGAT CTTCGTGTCT CGATCTACGA GCGCTTTCGC
GACGAGGGTA TAGGGGCGCC GTTCCCGATG AAGATCGAGG ACATTACGCC TGAAGAAGAA
GTCGAAGGCG CGAACGAAGA ACCTTCGGTT GTCGACGAAG AGAAGGTCCG ATCTGGCTGA
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| Protein sequence | MHLLENVRAF SIALFLGLLA LGALTLAADG PAVAQESEPS ARQSRPAEPA VPIQPAQSSQ
PAPQAAPTGP AAGTGGDQPS AAASPVLQQA EDQLAQADRE LKRITERTNA VEDDDAMLAE
LRAQVDELSK QIIAASVPTR PRLDEIKARL TELGDPPGEG QPPEDAVITD ERKRLLAERG
AINALTGRAE NLSIEARKLA NRITATRRAI FSNTLLRHTD VSVEMLSEAA TATLHEAMAL
SRSIGGWLTF AWNYKRVPLL SALFLSLCAA LLFLVGGYRL FSPVLMRPEE ADEPTYFRRL
SLAFWSTLIP TVALAAFAMS SYFFLSSFNI LRPDIAPIIA ITLAMGVVLF FIARLASAVL
SPSRSSWRLV RVSDRGAKML MVPIFAMALV NGLDYLLGSI SESLGSPVVL TIAKSFVASI
IIGLILMSMA WIRPVLRGDE PYDAPGHPWP RVISFSFLLL GAALIATALS GYVGLARFIA
TQITVTSAIL VTVYIGLLTG KSVSRQGAFA ETVAGRYLER RFQLEPVALD QFGLFAGLGI
YVLVLAFFIP LILLQWGFKT ADIESWTYRV LTEIRVGTIT ISLVGILAGI LLFALGFLVT
RWVQRWIDRN VMARSRVDAG VRNSIRTGIG YMGVGVAGLI GLSAAGIDLS SLALVAGALS
LGVGFGLQNI VSNFVSGLIL LVERPFKVGD WIVSGTTEGF VRRISVRATE IETFQHQSIM
MPNSLLINAS VGNWTHRNKL GRSEIAVTVT YDSDPRRIIE LLHDIAAAHP MVLKNPAPNV
GFTAFGDDRM TFELRIYVAD VLTAGGVRND LRVSIYERFR DEGIGAPFPM KIEDITPEEE
VEGANEEPSV VDEEKVRSG
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