| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1794 |
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| Symbol | |
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| ID | 5322652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1876418 |
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| End bp | 1877434 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640790732 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001327464 |
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| Protein GI | 150396997 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.112719 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00342809 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGAGGTT TTATGCACAA ACCGCTGACG AAGAAGCGTT CGCTCGTCTT CTTTCTGGTG
CCGCATTTTT CGATGCTACC CTTCTCGGCC GCGATCGAAA CACTGCGCAT TGCCAATCGC
ATGCTCGGTT ACGAGGCCTA TACCTGGCGC CTCGCTTCGA CCGACGGCCA GAAGGTCTAT
TCGTCGGCGG GCATTGCGCT CGAAGTCAAC ACCTCGCTTG CCGACGAGCG CAAATATCTC
GGTGGAGAGA ACCGGCCCTC GATGGTTCTG GTCTGTTCGG GCGTCTATGT CGAAGACTTC
CAGAACAAGT CGGTAAATGC TTGGCTGCGC GAGGCCTACA ACCGCGGCAT TGCGGTCGGC
AGTCTCTGTA CCGGCGCCCA CGTGCTCGCT TCGGCGGGCC TGCTCACGGG CAAGCGCTGC
GCGATCCATT GGGAAAACCT ACCAGGCTTC TCCGAGAGCT TCCCTCAGGC CGACGTATAT
GCGGACCTCT ATGAGATCGA CGGCAACATC TATACCTGCG CCGGCGGCAC CGCTTCGCTC
GACATGATGC TGAACCTGAT CGATCAGGAT TTCGGCGAGA ACCTCGTCAA CCGCGTCTGC
GAGCAGGCGC TGACCGACCG CGTGCGCGGG CCGCACGACC GGCAGCGGCT GCCACTGAGA
GCACGCCTTG GCGTTCAGAA CTCCAAGGTC CTTTCGATCA TCGAACTGAT GGAAAGCAAC
CTTTCCGAAC CGCTGTCCCT CCTTGAGATA GCGGAGAGCG CCGACCTGTC CCGCCGTCAG
ATCGAGCGGC TCTTCCGCCA GGAAATGGGA CGGTCGCCAG CCCGCTACTA TCTCGAGATT
CGCCTCGATC GCGCCCGGCA TCTGCTTATC CAGTCTTCCA TGCCGGTCGT GGAAGTCGCT
GTGGCCTGCG GTTTCGTATC CGCTTCACAT TTTTCGAAGT GTTATCGGGA GCTCTACAAC
CGCTCGCCGC AACAGGAACG CGCCGAACGC AAGCTGACGT TACAGATGGC GCGGTAG
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| Protein sequence | MGGFMHKPLT KKRSLVFFLV PHFSMLPFSA AIETLRIANR MLGYEAYTWR LASTDGQKVY
SSAGIALEVN TSLADERKYL GGENRPSMVL VCSGVYVEDF QNKSVNAWLR EAYNRGIAVG
SLCTGAHVLA SAGLLTGKRC AIHWENLPGF SESFPQADVY ADLYEIDGNI YTCAGGTASL
DMMLNLIDQD FGENLVNRVC EQALTDRVRG PHDRQRLPLR ARLGVQNSKV LSIIELMESN
LSEPLSLLEI AESADLSRRQ IERLFRQEMG RSPARYYLEI RLDRARHLLI QSSMPVVEVA
VACGFVSASH FSKCYRELYN RSPQQERAER KLTLQMAR
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