| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1772 |
|---|
| Symbol | |
|---|
| ID | 5322630 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1855817 |
|---|
| End bp | 1857868 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640790710 |
|---|
| Product | acyltransferase 3 |
|---|
| Protein accession | YP_001327442 |
|---|
| Protein GI | 150396975 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1835] Predicted acyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.415848 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0191672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTACA GACCTGAAAT CGACGGGCTT CGCGCAGTCG CTGTAATCCC CGTCCTGCTG
TTTCACGCCG GTTTCGGCTT TATATCCGGT GGTTTCGCGG GGGTCGACGT TTTCTTCGTG
ATCAGCGGTT TCCTGATCAC GGCCCTCATT CATCAGGAAA TCCGCAGTGG CGCATTCAGC
GTCATCGGAT TTTATGAGCG TCGTGCCCGG CGGCTCGCGC CGGCTCTTCT GTTCGTCTGT
ATCGCCTGCA TTCCCTTCGC GCTTATGTGG ATGCTGCCGA AGGAATTGAA CGAGTTCGGC
AAGAGCCTTT ATGCGGCGAA TCTGTTCGCG GCCAATTTCT TCTTCTGGGA CCAGACGAAT
TATTTCACGC CCGATACCGG CCTCATGCCG CTGCTGCACA CCTGGTCTCT GGCGGTGGAG
GAGCAGTTCT ACGTCGTTTT CCCCTTGCTT TTGATTTCGC TGCGCCGCTT CACGGAGGCG
GCCGCGCTCA GAGCCGTCGT CGCGGTGACT GTTCTGAGCT TCGGTGCGAC CCAGCTCGTC
GTGGGCATCG ACCCGGCGGC AAACTTCTAT CTCCTGCCCA GTCGCTTCTG GGAACTCGGC
CTCGGTGCCG CTGTTGCCCT CTCGGGCATT GCGCATCGTG AGCTTTCCAG ATCGCTGCGC
GAGTGCTTCG CGTGCTTCGG GGTTTTCCTG ATCGGCGCGA GCTATCTGTC AATTACCGAA
GCGCAACATT ATCCAGGCTG GGCGACTGTC CCGGTGGTCG CCGGTACGGC TTTGGTCATC
GCTTTTGGCC GCAGAGACAC GCTGATCGGC AAGTGCCTTT CAGTCCGCCC GCTCGTTGCG
ATCGGGCTCT GCAGTTACAG CCTATATCTC TGGCATCAGC CGGTATTCGC ATTTGCGCGG
ATGCGCATGA ACGACAGTTT GACGCCTGCC GGCTGCCTGG CACTGATCTC GCTCTGCTTC
GGACTGGCCT ATCTAAGCTG GCGATATGTC GAGAGGCCCT TTCGCAATCG TGCCCGTTTC
AGCCGGACGG CGATATTCGC GACCGTCGCA TCTATCGGCT CCATCACTGT TGCGGCTGGC
CTCGTCCTGG ACGGCAGCGA CGGGCTTGCT GGACACAACG TCGAACTCGC CCGTCTGGCC
AAGCCGAGCG TCGGCTTAAG CAAGGACTGC AATGCGGTAA TCGACTTGAA GTGCAGCACA
AGCAGCCAGC CGGTGATTGC CGTCTGGGGA GACTCCTTCG CCCGGCACCT CGTCGACGGG
ATCCTGGCCT CCGAACCAGA AGCCCGGCTC GTGCAACTGA CGAACAATAA TTGCGGTCCG
CTCACCGGAC TTGCCCCGAT TCTCCCCAGG CTCGACCCCG CCTGGCCGCA GAAGTGCATC
GGCCACAATA AGGAGGTGCA GCGCTTCCTT CTGGCGCACA GGTCAATCCG CTATGTCGTT
CTGTCCTCGC CACTGAACCA GTATCTCGCG GAGAAAACGA TGCTTCTCGA GGGCAGGGGA
GCGGTGCAGT CGGACGCCTG GATTGTTGCC GACAGCTTTC GAGCAAGCCT TGCATGGTTG
CGAAGCAATG GCTTTCGGCC AGTCGTCATC GCACCGCCAC CACAGGACGG GCGCGACAGC
GGCCTTTGCG TTGCGCGAGC GCGCCTGCTC GGCGCCTCTG CCGAAGGCTG CGGTGCATCG
TTTGAAACCG TACGGATGCA CGACCGAGAC GTGCTCACTG TCCTGGCGGG CATCGCCCGG
GACTATCCGG TCGTGAGCTT CAACGGTTAT CTCTGCGATG ACGGCCGCTG CAGGACCGAG
GACAAAGGCG TGGCTATTTT CGAGGACCAC GGGCATTTTT CAGACGAAGG CTCCCGCCAC
CTCGGCACCA CGCTTGAATT TTACCAAGTG TTTGCCAGCG CAGCCGAATA TGGCTGCACT
GCGGAACGCG GTCGGCTCGG GGCGCCCATT CGCGGGATAT GCAATCCTGC CGAGGACACC
ATTATGGTGA GTGCCAGCGC AAACGACGTT TTCCCAGCAC GTTCACGCAC TGGCGTTGAA
CGCGCGCAAT AG
|
|---|
| Protein sequence | MHYRPEIDGL RAVAVIPVLL FHAGFGFISG GFAGVDVFFV ISGFLITALI HQEIRSGAFS
VIGFYERRAR RLAPALLFVC IACIPFALMW MLPKELNEFG KSLYAANLFA ANFFFWDQTN
YFTPDTGLMP LLHTWSLAVE EQFYVVFPLL LISLRRFTEA AALRAVVAVT VLSFGATQLV
VGIDPAANFY LLPSRFWELG LGAAVALSGI AHRELSRSLR ECFACFGVFL IGASYLSITE
AQHYPGWATV PVVAGTALVI AFGRRDTLIG KCLSVRPLVA IGLCSYSLYL WHQPVFAFAR
MRMNDSLTPA GCLALISLCF GLAYLSWRYV ERPFRNRARF SRTAIFATVA SIGSITVAAG
LVLDGSDGLA GHNVELARLA KPSVGLSKDC NAVIDLKCST SSQPVIAVWG DSFARHLVDG
ILASEPEARL VQLTNNNCGP LTGLAPILPR LDPAWPQKCI GHNKEVQRFL LAHRSIRYVV
LSSPLNQYLA EKTMLLEGRG AVQSDAWIVA DSFRASLAWL RSNGFRPVVI APPPQDGRDS
GLCVARARLL GASAEGCGAS FETVRMHDRD VLTVLAGIAR DYPVVSFNGY LCDDGRCRTE
DKGVAIFEDH GHFSDEGSRH LGTTLEFYQV FASAAEYGCT AERGRLGAPI RGICNPAEDT
IMVSASANDV FPARSRTGVE RAQ
|
|---|
| |