| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1744 |
|---|
| Symbol | |
|---|
| ID | 5322602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1823835 |
|---|
| End bp | 1824836 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640790682 |
|---|
| Product | aminotransferase class I and II |
|---|
| Protein accession | YP_001327414 |
|---|
| Protein GI | 150396947 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0079] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase |
|---|
| TIGRFAM ID | [TIGR01140] L-threonine-O-3-phosphate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.57305 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.193551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAATC CGATCACCCA TGGCGGCGGA ATCTCGGAAG CTGCAGCGCG CTTCGGCGGC
AGGCCGGAGG ACTGGCTTGA CCTCTCGACG GGCATCAATC CCTGTCCCGC GGCGCTGCCG
GAGATCGATG CCCGGGCCTG GCATCGGCTG CCGGACCGGC ATGTGGAAGA GGCAGCGCGC
GCGGCGGCCA GCCGCTATTA CCGGACCGGC GGGCTGATGC CCTTGCCGGT GCCGGGAACG
CAGGCGGTCA TTCAGTTGCT TCCGCGGATC GCGGATCCGG GGAAGAGGGC AGCCATCTTC
GCTCCAACCT ATGGGGAGTA TGCACGCGTT CTGAGAGCCG CCGGCATTGC CGTCGATACT
GTCGGATACG CCGATGATCT TCAGGCAGCG CACGGACTTT CCGTCATCGT CAATCCCAAC
AATCCGACGG GTCGTTTTTT TCCGCCGGAT GAAATTCTTG CGATGGCGGA GGCGATGAGA
ACTCATCGCG GACTCCTCGT GGTGGACGAA GCTTTCGGCG ATCTGGAGCC GGCGGCAAGC
GTGGCCGGAC ATGTAGCGGC TCATGACAAT CTTATCGTTT TCCGCTCCTT CGGTAAGTTC
TTCGGTCTTG CGGGGCTTCG CCTCGGCTTT GTGGTCGCGA ACCGCCCGAT CGAGGAAGCG
CTCCGCAACT GGCTCGGCCC ATGGGCGGTC TCGGGGCCGG CACTCGCCAT CTCGGCGAAG
CTGATGGAGG GTGATACGAA CCGGATCAAA GCCGGTATCG CGGAGCGCAA AGCTGCGCTC
GACGCCCTGC TTTTTGGCGC GGGCCTTCAC ATCGTCGGCG GCACCGGCCT CTTCGCACTC
GTCGATCACG AGCGGGCGCA CGATATTCAT ACCGCACTCT GCGAGGCGCA CATCCTGACG
CGCAAATTCG ACTATGCTCC GCGCTGGCTG CGAATCGGGC TGTCACCGAA CCCGGCAAGC
GACCGCCGGC TCGCAGAGGC GTTTAATCGA ATGGGTTTTT AA
|
|---|
| Protein sequence | MPNPITHGGG ISEAAARFGG RPEDWLDLST GINPCPAALP EIDARAWHRL PDRHVEEAAR
AAASRYYRTG GLMPLPVPGT QAVIQLLPRI ADPGKRAAIF APTYGEYARV LRAAGIAVDT
VGYADDLQAA HGLSVIVNPN NPTGRFFPPD EILAMAEAMR THRGLLVVDE AFGDLEPAAS
VAGHVAAHDN LIVFRSFGKF FGLAGLRLGF VVANRPIEEA LRNWLGPWAV SGPALAISAK
LMEGDTNRIK AGIAERKAAL DALLFGAGLH IVGGTGLFAL VDHERAHDIH TALCEAHILT
RKFDYAPRWL RIGLSPNPAS DRRLAEAFNR MGF
|
|---|
| |