Gene Smed_1723 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1723 
Symbol 
ID5322581 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1802441 
End bp1803202 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content62% 
IMG OID640790661 
Productxylose isomerase domain-containing protein 
Protein accessionYP_001327393 
Protein GI150396926 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1082] Sugar phosphate isomerases/epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.186177 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGATG TCAGCTTCCA GCTTTACAGC GCCCGAAATT TCCCGCCCTT TGCCGAAGTC 
CTCTCTGCCA TCGGTTCTGC GGGCTACACG CAGGTCGAGG GTTACGGAGC CCTTTACGCG
GCACTCTCTG ATGCGGAGAT CGCCGAGTTC AAGGCCGGAC TCGACCGCAA CGGCCTATCC
ATGCCGACAG CCCATTTCGG CTTGGACATG CTGGAGGGCA ATCCGTCCCG CGTTCTGCAG
ATCGCCGAGT CGCTCGGCAT TCGCGCTATC TATTGCCCCT ACCTGATGCC GGATCAGCGC
CCGAGCGATG CGACCGGCTG GCGGGCCTTC GGGGGCCGTC TGCAGGCGGC CGGTAAGCCG
TTCCGCGATG CCGGCCTCGA TTTCGGTTGG CACAATCACG ACTTCGAGTT TCACGCGCTC
GCCGACGGCT CGGTGCCGCT CGACCAGATC TTGGCAGGCG GTCCCGACCT TTCCTGGGAA
GCCGATATCG CCTGGATCGT GCGCGGCGGA GCGGATCCAT TCGCCTGGAT CTCGAAATAT
GGCCCCCGCA TCACGGCGGT CCACGTCAAG GATATCGCGC CTAAGGGCGA GAAGGCGGAC
GAGGACGGTT GGGCCGATGT CGGGGAGGGG ACGCTCGACT GGAAGGCACT GATACAGGCG
CTTTCCAGGA CGTCGGCGAA ATATTTCATC GCCGAACACG ACAATCCCAG CGATTTCCGG
CGTTTCGCCA AGCGCTCGCT GGCCTCTATT CAATCCTACT GA
 
Protein sequence
MKDVSFQLYS ARNFPPFAEV LSAIGSAGYT QVEGYGALYA ALSDAEIAEF KAGLDRNGLS 
MPTAHFGLDM LEGNPSRVLQ IAESLGIRAI YCPYLMPDQR PSDATGWRAF GGRLQAAGKP
FRDAGLDFGW HNHDFEFHAL ADGSVPLDQI LAGGPDLSWE ADIAWIVRGG ADPFAWISKY
GPRITAVHVK DIAPKGEKAD EDGWADVGEG TLDWKALIQA LSRTSAKYFI AEHDNPSDFR
RFAKRSLASI QSY