| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1716 |
|---|
| Symbol | |
|---|
| ID | 5322574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1795675 |
|---|
| End bp | 1796742 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640790654 |
|---|
| Product | spermidine/putrescine ABC transporter ATPase subunit |
|---|
| Protein accession | YP_001327386 |
|---|
| Protein GI | 150396919 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.198407 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGCA ACGCATTTAT TCACTTCGAC AACGTCAGCA AAGCGTTCGG CGTCATGACG
GTCGTCGACA ATCTCGAACT GGCCATCCAA CAGGGCGAAT TCGTCAGCAT GCTTGGACCT
TCGGGTTCTG GCAAGACGAC GCTTCTGATG ATGCTGGCCG GCTTCGAGGC TCCTAGCAGC
GGCTCGATCT CCGTCAAGGG TAAGCGCGTC GATGCATTGC CCCCTTACAA ACGGAACATG
GGGGTGGTTT TCCAGAACTA CGCTCTGTTC CCCCATATGA CAGTTGCCGA AAACGTGGCG
TTTCCCCTCA AAATGCGAGG CGTCTCTCGC AGCGAAACCG CCGAACGAGT GGGCAAAGCT
CTGGACATGG TCCAGCTCGG GCAATTCCAT GAAAGGCGGC CGAGCCAGTT GTCCGGCGGT
CAGCAGCAAC GCGTGGCGCT GGCGCGGGCG CTCGTCTTCG AGCCCGAAGT CGTCCTTATG
GACGAACCGC TCGGGGCCCT GGACAAAAAG CTGCGCGAGC AAATGCAGAT GGACATTCGC
GACATCCATC ATCGCTTGGG TCTGACCATC GTTTTCGTCA CGCATGATCA GGCCGAAGCG
CTGACGATGT CGGACAGAAT TGCGATCTTC AATCACGGGA AGATCGAGCA GATCGGCAAG
CCTTCCGAAA TCTACGACCG CCCGACGACG CAGTTCGTCG CCGAGTTCAT TGGCGAAACC
AACCTGCTCA GCGGGAGGGT CACGGCCTGC CGGAACGGCC TTTTGGATGT TGCGGTCGAG
GGCGGCCAGC AAATCAAGGT CGCTTCCACC GCGAAGTTCG AACCGGGTGA GCATGTGAAA
GTGTCCGTTC GGCCGGAGCG CATCGAACTC GCTCCCGCTG GCGGTTCGGC GAATGAATTG
AGTGTCAGGG TGTCCGACGT CGTCTATCGC GGCGATCACC TGCAGGTGAT CGCCGCGGCT
GCGAGCGGAC CACTCGTCGT AAAATCGACC AGGAAAGCAA GCGCGCCTCG TATCGGCGAT
GAGGCGGTTG CTTCATTCTC CCCCGAACAA TGCTGGATCG TCGCATGA
|
|---|
| Protein sequence | MMGNAFIHFD NVSKAFGVMT VVDNLELAIQ QGEFVSMLGP SGSGKTTLLM MLAGFEAPSS
GSISVKGKRV DALPPYKRNM GVVFQNYALF PHMTVAENVA FPLKMRGVSR SETAERVGKA
LDMVQLGQFH ERRPSQLSGG QQQRVALARA LVFEPEVVLM DEPLGALDKK LREQMQMDIR
DIHHRLGLTI VFVTHDQAEA LTMSDRIAIF NHGKIEQIGK PSEIYDRPTT QFVAEFIGET
NLLSGRVTAC RNGLLDVAVE GGQQIKVAST AKFEPGEHVK VSVRPERIEL APAGGSANEL
SVRVSDVVYR GDHLQVIAAA ASGPLVVKST RKASAPRIGD EAVASFSPEQ CWIVA
|
|---|
| |