| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1715 |
|---|
| Symbol | |
|---|
| ID | 5322573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1794538 |
|---|
| End bp | 1795578 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640790653 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001327385 |
|---|
| Protein GI | 150396918 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.353198 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAAATTC TCAAAGCCAC TATCATTGTC TCCAGCGTCC TGATGACAGG CACCTTCGGC
GCGCAAGCGC GCGACCTCAC CGTCGTGTCC TGGGGCGGAA ATTTCCAGGA TGCGCAACGA
AAAATATTCT TCGAAACTTT TGCCAAGGAA ACCGGGAAAC CTGTCCTCGA TGAAAGCTGG
GAGGGTGGAT ACGGTGTGTT GCAGGCCAAG GTAAAGGCCG GTATCCCGAA CTGGGACGTA
GTCGAAGTCG AAGCCGAAGA ATTGGCGCTG GGTTGTGCCG ACGGCATCTT CGAGAAGATC
GACTGGCAGA AAATGGGCGG TAAGGAAGCA TATCTTCCCG CCGCCGTCAG CGACTGCGGG
GTCGGCAATA TAGTTTGGTC GACGGGCCTG TCTTATGACG GTGACAAGCT TGCAGAGGGT
CCGAAGACCT GGGCCGATTT CTGGGATACC AAGAAATTCC CCGGCAAGCG CGGCCTGCGC
AAGGGACCGA AATACGCGCT CGAGTTCGCT CTGATGGCCG ATGGCGTCGC CCCCGACCAG
GTGTACGATG TGCTCAGTGG CGAGGGCGGC GTCGATCGCG CCTTCAAGAA GCTCGATGAA
TTGAAGGCCG ATATTATCTG GTGGGACGCC GGGGCGCAGC CGCTTCAACT GTTGTCTTCC
GGCCAGGTCG TGATGACGTC GGCATATAAC GGCCGGATCA GCGGTATCAA CCGGAGCGAG
GGCAAGAAGT TCGGCTTCGT TTTCCCGGGC AGCGTCTATG CGATCGACAG CTGGGTCATC
CTCAAGGACA GCCCGAACAA GGACGCGGGC ATGGACTTCA TCGCCTATGC CAGCAAGGCC
GAAAACCAGG CGAAGCTTCC TGAGTTCATC GCATATGGCC TACCGAACCT CGGGGCCACC
GAACTTGTCC CGCAACAGTT TCAGGAAGAG CTGCCTACAA CGGAAAAGAA CCTGAATGGT
GCGGTCGCCC TCGATGTGGA TTTCTGGACC GACAACTCCG AAGAACTGAC CCAGCGGTTC
AACGCCTGGC TCGCTCAGTA A
|
|---|
| Protein sequence | MKILKATIIV SSVLMTGTFG AQARDLTVVS WGGNFQDAQR KIFFETFAKE TGKPVLDESW
EGGYGVLQAK VKAGIPNWDV VEVEAEELAL GCADGIFEKI DWQKMGGKEA YLPAAVSDCG
VGNIVWSTGL SYDGDKLAEG PKTWADFWDT KKFPGKRGLR KGPKYALEFA LMADGVAPDQ
VYDVLSGEGG VDRAFKKLDE LKADIIWWDA GAQPLQLLSS GQVVMTSAYN GRISGINRSE
GKKFGFVFPG SVYAIDSWVI LKDSPNKDAG MDFIAYASKA ENQAKLPEFI AYGLPNLGAT
ELVPQQFQEE LPTTEKNLNG AVALDVDFWT DNSEELTQRF NAWLAQ
|
|---|
| |