Gene Smed_1714 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1714 
Symbol 
ID5322572 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1793871 
End bp1794419 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content59% 
IMG OID640790652 
ProductXRE family transcriptional regulator 
Protein accessionYP_001327384 
Protein GI150396917 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.510937 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGAAAA TCGGAAGCAA ACTTCGTGAA CTGCGCCGGA GACGAGACTT GGGTGTCAGA 
GAGCTTGCCG CGCGGTCCGG AATTTCGCAC TCCACGATTT CACTTATCGA GCGAGACCGG
ATGAGCCCGT CGATCGACAC GCTCGGCGCG GTGCTCGATG CCCTGGGCAC CACATTGCCC
GGCTTCTTTT CCGACCTGCA ATCGAGCCTT CCGTATACGC CGTTCTATTC CTCGACCGAC
CTCATCGAGA TTGGAAAGGT TGATACAATC TCCTATCGCG TCATCGGACT GGACCACCCC
AACAGACAGA TGCTCATGCT CCACGAACGT TACGCGATCG GCGCAGATAC CGGCGAGGAG
TTCACGCATG CAGCCCAGGA GGCCGGCATG GTCCTGTCCG GAGCAGTCGA GGTGACGGTA
GGCAATCAGA AGCGTGTGTT GCACCCTGGT GACGGCTATT ATTTCGATAG CCGCCTCCCC
CATCGTTTCC GGAACGTTCA CGACGGCCAG AGCGAGGTCG TGAGCGCCAT CACGCCGCCG
ACTTATTGA
 
Protein sequence
MPKIGSKLRE LRRRRDLGVR ELAARSGISH STISLIERDR MSPSIDTLGA VLDALGTTLP 
GFFSDLQSSL PYTPFYSSTD LIEIGKVDTI SYRVIGLDHP NRQMLMLHER YAIGADTGEE
FTHAAQEAGM VLSGAVEVTV GNQKRVLHPG DGYYFDSRLP HRFRNVHDGQ SEVVSAITPP
TY