| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1712 |
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| Symbol | |
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| ID | 5322570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1790447 |
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| End bp | 1792237 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640790650 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001327382 |
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| Protein GI | 150396915 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.508509 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGAGT TCGTCGCTGA AAACCTGGCG CCCATCATGT TCGTGTCGCT GATCGTGTTC
CTTCTGCTCG GATACCCGGT CGCCTTCTCG CTCGCCGCCA ACGGTCTCCT GTTCTTCATA
ATCGGCGTCG AACTTGCGCC CTTGTCCGAC TCCATCAATC TCTCCTGGCC TCTGCTCAAC
GCACTGCCGG AACGGTTCTG GGGAGTCATG TCGAACGATA CGCTCCTCGC CATTCCCTTC
TTCACTTTCA TGGGCATAGT GCTCGAACGA TCGGGCATGG CCGAGGACCT TCTCGACACC
ATCGGCCAGC TTTTCGGCCC GGTGAGAGGC GGCCTTGCCT ACGCCGTCAT CTTCGTAGGC
GCATTGCTTG CTGCCACGAC CGGCGTCGTA GCGGCTTCCG TCATCGCCAT GGGCCTGATC
TCACTGCCGA TCATGCTGCG CTACGGCTAC GACCGCCGCG TCGCTTCAGG CGTCATCGCC
GCCTCCGGCA CGCTCGCCCA GATCATCCCA CCGTCCCTCG TGCTGATCGT TCTCGCCGAC
CAGCTCGGCC GTTCCGTCGG CGACATGTAT GCCGGCGCGC TCATTCCCGG CCTTATTCTG
ACGAGTCTGT ACATGGGCTA CATTCTGCTC ATGTCGTTCC TGAAGCGTGA CTCCATGCCG
GCATTGCCGC TGGAAGCCCG CACGCTCGGT TCCGGCGTAA CCTCGCTTCT CGTCGCGCTG
GTCGTCGCCG CAGGCATAGC CTATGCGGCC CATGTCTATT TTTCCCCGAC GCAGGGAGAA
AACGCAGACA TCCTCGGAGC GACGGTGGGC GTCCTGTTCA TCTACCTGGT GGCGCTTGCC
GACAGGGCGT TCAAGATCAA CGCGCTTTCC CGGCTCGCTC AGCAGGTAAT CATCGTCTTG
ATCCCGCCGC TGGCTCTGAT CTTCCTGGTT CTCGGTACGA TCTTCCTCGG CATCGCCACC
CCGACGGAAG GCGGAGCCAT GGGCGCCGTC GGCGCGCTCG TCATGGCGGC AGCCAAGGGC
CGCCTGAGCA TGGAGGTCAT CCGCGCCGCG CTGGCCTCCA CAACGAGGCT CTCCGCCTTC
GTGCTGTTCA TCCTGATCGG CGCCCGCGTC TTTTCGCTCA CCTTCTACGG CGTCAACGGC
CACCTCTGGG TGGAGCATCT GCTGACTGCG CTGCCTGGCG GAGAAATCGG CTTCCTGATC
GCCGTGAACG TGCTCGTCTT CTTCCTGGCG TTCTTCCTGG ATTTCTTCGA ACTCGCCTTC
ATCATCGTGC CGCTCCTCGC ACCGGCAGCC GACAAGTTGG GGATCGACCT GATCTGGTTC
GGCGTGCTGC TCGGCATCAA CATGCAGACG AGCTTCATGC ATCCGCCCTT CGGCTTCGCG
CTGTTCTATC TGCGATCCGT GGCAGCCAGA GTGCCCTATC TGGACAAGGT GACCGGCAAA
AGGATGCAGC CGGTAACGAC CGGGCAGATC TATTGGGGCG CCGTTCCTTT CGTCTGCATA
CAAATCATCA TGGTTGCGCT GACGCTGATG TTCCCGCAGA TGGTCCTGCA TTACAAAGGC
ACCGGCTCGG AGGTCGATCC GTCGACGATC AAGATCGAAG TTCCGGGTTT CGGGTCCGGC
GGCGGCGGGC TTACCCTGCC CGACAATGGC GGCGGTCTCG GCCTTCCCGG CGGCCTGCAG
CTGCCGGGCG GCAGCCCGCT CGACGAGAGC CGGCAGCCGG CCCAACCGGA TACGGCGCCG
AAGCAGAACA ATACGGCACC CGATCTCAGC GCGCCGCCAT CGTTCAACTG A
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| Protein sequence | MIEFVAENLA PIMFVSLIVF LLLGYPVAFS LAANGLLFFI IGVELAPLSD SINLSWPLLN
ALPERFWGVM SNDTLLAIPF FTFMGIVLER SGMAEDLLDT IGQLFGPVRG GLAYAVIFVG
ALLAATTGVV AASVIAMGLI SLPIMLRYGY DRRVASGVIA ASGTLAQIIP PSLVLIVLAD
QLGRSVGDMY AGALIPGLIL TSLYMGYILL MSFLKRDSMP ALPLEARTLG SGVTSLLVAL
VVAAGIAYAA HVYFSPTQGE NADILGATVG VLFIYLVALA DRAFKINALS RLAQQVIIVL
IPPLALIFLV LGTIFLGIAT PTEGGAMGAV GALVMAAAKG RLSMEVIRAA LASTTRLSAF
VLFILIGARV FSLTFYGVNG HLWVEHLLTA LPGGEIGFLI AVNVLVFFLA FFLDFFELAF
IIVPLLAPAA DKLGIDLIWF GVLLGINMQT SFMHPPFGFA LFYLRSVAAR VPYLDKVTGK
RMQPVTTGQI YWGAVPFVCI QIIMVALTLM FPQMVLHYKG TGSEVDPSTI KIEVPGFGSG
GGGLTLPDNG GGLGLPGGLQ LPGGSPLDES RQPAQPDTAP KQNNTAPDLS APPSFN
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