Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1658 |
Symbol | |
ID | 5322516 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1747412 |
End bp | 1749136 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640790598 |
Product | lambda family phage portal protein |
Protein accession | YP_001327330 |
Protein GI | 150396863 |
COG category | [R] General function prediction only |
COG ID | [COG5511] Bacteriophage capsid protein |
TIGRFAM ID | [TIGR01539] phage portal protein, lambda family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0805551 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.257873 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGGCG ACGTCACGAT CCTCGGCCCC GATGCGAAGC CGCTTTCGCC GGCAGTTCGT GCCGCTGCCC GCGTGCAGGT TGCGAGAAAC CGGCTGATGG CGTCTTCGGC CTACCAAGGT GCATCCTACG ATCACCCGTC CTTCGCCAAA TGGCGGCCGG GCACCTGGTC CGGGCAGTCG GCGCTGACCT GGTCGCGCTC CGAGCTGGTC GACCGGCTGA ACGACGTGGC GCGCAATGAC GGCTGGGGTG CCGCCGGCAC CTCGCGCCTC GTCGACAACA TCATCGGCTC GGGCTGGACG CTTGCGGCGC GGCCGAACCA CGTCTCGCTC AACATGACCT TTGAGCAGGC GGAGGAGATC GCCGACAAGA TCGAGGCCCT GTGGCGCGAT TACACGCAGG ACGTCGACAA ATGGTGCGAC GCCGAGCGGA CGAAAACCAT GGCCGGCGTT CTCGGCCTTG CTGCCCGTCA GCGGTTTGGT CCCGAGGGCG AGGCCTTCGG CGTCATCGTC TGGCAGGACA ATGCACCGTT GTTCCAGACG GCAATCCATG TCGTCGATCC GGCCCGGTGT TCAAACCCGA ACGGGCGCAT GGACGAGGAG TTCCTGCGCG ACGGCGTTGC CATCGACGGA TACGGCGCAC CGGTCGGCTA CCACTTCCGC AAGTCGCATC CCGGCGAGTT CTTCGCCGGC AATACCGGCC TGTGGCATTG GGAGTATGTC GATCGGGAGA CCGAATGGGG GCGCCCGATC GTCGTTCACG CCTACGAGCA GAAGCGCGCC GGCATGACGC GCGGCGTTTC CGACTGGGCT CCGGTCATGC GGTCGATCAA GCAGTCGACC GACTACGAGG ACTATGAGAG CCAGGCGGCA ATGCTGAACG CTGTCATGGC TGCCTTCATC GAAACCCCCT TCGATCCGGA AGAGATGCTC GAGGCGATCG GCGCGGATTA CGGCAATGAC GGCATCGCCA AGCTCTTCGG CGAAATGTCG GCCGCGCAGA AGGCCTATTA CGGCGCCGCA CCGATCGATT TGCCCGGCGT TCGTATCAAC ACGCTGCAGC CCGGCGAAAA GGCGACGCTG ACCAAGCCGG AGCACCCGAA CGCCAATTTC GAGGCCTTCG TCAATGCGGC GCTGCGCAAG GTCGCGAGTG CGATCGGCGT CACCTACGAG CAGCTCACCA TGGACTGGAG CCAGGTGAAC TATTCGTCGG CGCGCGCGGC ACTCCTCGAG ATCTGGCGCG GCTTCACCGC CAAGAAGGGC GGCTTCGCCT CGCAGTTCAT GGCACCGATC TATCGGGCAT GGCTCGAGGA GGTGTTCGAC AAGGGCCTGA TCGAGCTCCC GGCGGGAGCC GTTCCTTTCG AGCTGAACCC GGCAGCATGG TGCCATGCGG ACTGGATCGG CCCCGGCCGC GGCTGGATCG ATCCGCTGCG CGAGGCGCAG GCTGCCAGCG AGCGGCTCGC CGGCAATCTG ACCACGCTCC AGCAGGAAGC GGCCGAGCAG GGGCGGGACT GGAAGATGGA TGCGCAGCAG CGCGCCCGGG AACGGGCCTT CTACGAACGG CTCGGGCTCG ATCCAGATCC TGGCAAGCCC GAAGCCAGAT CGCAGGCGAG TGCCGCTCCG CCAGCCGAGC CCGGCGACGA GGCCGAGGAA GAGGTCAACG GACGGACCTC GGCGCGGCGC CATCCTGCCG GCATCCCGAG GATTGCCAGA AGGAAAACGG CATGA
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Protein sequence | MSGDVTILGP DAKPLSPAVR AAARVQVARN RLMASSAYQG ASYDHPSFAK WRPGTWSGQS ALTWSRSELV DRLNDVARND GWGAAGTSRL VDNIIGSGWT LAARPNHVSL NMTFEQAEEI ADKIEALWRD YTQDVDKWCD AERTKTMAGV LGLAARQRFG PEGEAFGVIV WQDNAPLFQT AIHVVDPARC SNPNGRMDEE FLRDGVAIDG YGAPVGYHFR KSHPGEFFAG NTGLWHWEYV DRETEWGRPI VVHAYEQKRA GMTRGVSDWA PVMRSIKQST DYEDYESQAA MLNAVMAAFI ETPFDPEEML EAIGADYGND GIAKLFGEMS AAQKAYYGAA PIDLPGVRIN TLQPGEKATL TKPEHPNANF EAFVNAALRK VASAIGVTYE QLTMDWSQVN YSSARAALLE IWRGFTAKKG GFASQFMAPI YRAWLEEVFD KGLIELPAGA VPFELNPAAW CHADWIGPGR GWIDPLREAQ AASERLAGNL TTLQQEAAEQ GRDWKMDAQQ RARERAFYER LGLDPDPGKP EARSQASAAP PAEPGDEAEE EVNGRTSARR HPAGIPRIAR RKTA
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