| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1601 |
|---|
| Symbol | |
|---|
| ID | 5322459 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1697549 |
|---|
| End bp | 1698481 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640790545 |
|---|
| Product | transposase IS116/IS110/IS902 family protein |
|---|
| Protein accession | YP_001327277 |
|---|
| Protein GI | 150396810 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3547] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.806368 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.405689 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACATC CTGATGTCAT CGGATGCGAT ATTGCAAAAG CGCATCTAGA TTTTTTCGAC
AGCGGCCTTG AGCGCCATTT CCGTATCGAC AACACTCCGG CCGCAATTTC CGCGTGGCTC
GACGGCCTTG ATGGCAGAGG CGTTCATATC GTCTTTGAGG CGACCGGGCG TTACGATCGG
CAGTTGCGCA TAGCCCTGGA GACCCGGGAG TTGCCCTATT CCCGCGTCAA TCCTGCCCGC
GCCCGCGACT TTGCCAAGGC GATCGGCCTT CTTGCCAAGA CGGATGCGAT CGATGCACGT
CTGCTTGCCC GGATGGGTCA AAGCCTGCCA CTCTCAACTC AGGCGCCTGA CGATCCCGCC
CGCCACGTGC TCGCCCGCCT TCACACGCGG CGTGACCAGC TCGTGGCCAT GCGCCAGCAA
GAGCGGACAC GCCTTCATGA GACCGAGGGG ATCGAGCGTG ACAGCGCTGA AAGCCATATG
GCTTGGCTCG ACGCGGAGGT TGCGCGCATC GAAATGGCAT GCCGTGATGT TCTGAAGGCC
GAGAAGACCT TGCAAGAACA AGAGGCAAGG CTGCGTTCCA TTCCCGGCAT CGGCCCCGTG
GCCGCATTGA CCCTGATCGC GCATATGCCA GAACTCGGCA ATCGTTCGGC CAAGGCGATT
GCAGCCCTTG CCGGTCTTGC GCCCTTCAAT GTCGACAGCG GCACGTCACG GGGAAAGCGG
CATATACGCG GCGGTCGCAA GCGGATACGT GACGCGCTCT ACATGGCGGC GCTCACAGCC
AGCCGTATGC CCCGTGCTTT TAAGTCCCAT GCTGACCAAA TGAAGGAGGC AGGCAAGCCC
TTCAAGGTCG TCATCATTGC GCTTGCCCGC AAATTGCTCG CCATCGCAAA CGCCATCATC
AGGGACAAAA CAACCTTCCG ACGAACCACC TGA
|
|---|
| Protein sequence | MIHPDVIGCD IAKAHLDFFD SGLERHFRID NTPAAISAWL DGLDGRGVHI VFEATGRYDR
QLRIALETRE LPYSRVNPAR ARDFAKAIGL LAKTDAIDAR LLARMGQSLP LSTQAPDDPA
RHVLARLHTR RDQLVAMRQQ ERTRLHETEG IERDSAESHM AWLDAEVARI EMACRDVLKA
EKTLQEQEAR LRSIPGIGPV AALTLIAHMP ELGNRSAKAI AALAGLAPFN VDSGTSRGKR
HIRGGRKRIR DALYMAALTA SRMPRAFKSH ADQMKEAGKP FKVVIIALAR KLLAIANAII
RDKTTFRRTT
|
|---|
| |