| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1546 |
|---|
| Symbol | |
|---|
| ID | 5322404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1639352 |
|---|
| End bp | 1639837 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640790491 |
|---|
| Product | MerR family transcriptional regulator |
|---|
| Protein accession | YP_001327223 |
|---|
| Protein GI | 150396756 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR01950] redox-sensitive transcriptional activator SoxR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.548833 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.109608 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAAG ACAAAGCCAA CGAATTCAAG CGCGAACTGA CAGTTGGCGA AGTCGCCGAA
CGCAGCGGCC TCGCCGTGTC GACGCTTCAT TTCTACGAAA GCAAGGGGCT CATCCGCAGC
AATCGAAGCC GTGGCAACCA GCGACGATAC CCGCGCTCCG TCCTGAGGCG CGTGGCCGTG
ATCAAGATCG CCCAGCGCAC CGGTATCCCG CTTTCGGAAA TACAGGCGGC TCTGTCGGTG
CTTCCCGACG ACCGGCCGCT GACGGTTGAG GACTGGGGAA GGTTTTCGAT GACCTGGCAG
CGTCAGCTTG ACGAACGAAT CGCCAAGCTG ACGGCGCTGC GCGATCAACT CACCGGCTGT
ATCGGCTGCG GTTGCCTGTC GATGCGTGAC TGTCCCCTGC GCAACCCATG GGACGTTCTC
GCGGCAGAGG GCACCGGGCC GCGCCTCATC GATCCCGCCG ACGGGTCGGA GCATGAGGCG
AGTTAG
|
|---|
| Protein sequence | MKKDKANEFK RELTVGEVAE RSGLAVSTLH FYESKGLIRS NRSRGNQRRY PRSVLRRVAV
IKIAQRTGIP LSEIQAALSV LPDDRPLTVE DWGRFSMTWQ RQLDERIAKL TALRDQLTGC
IGCGCLSMRD CPLRNPWDVL AAEGTGPRLI DPADGSEHEA S
|
|---|
| |