Gene Smed_1539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1539 
Symbol 
ID5322397 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1630779 
End bp1631648 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content60% 
IMG OID640790484 
Productcytochrome c1 
Protein accessionYP_001327216 
Protein GI150396749 
COG category[C] Energy production and conversion 
COG ID[COG2857] Cytochrome c1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.432409 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGC TTGTTACAGG CATTCTGTCA CTCGCTGTCG TCGCCGGTCT CGGGTTTGGA 
GCGGCTATCG CCCAGGACGA AGCAGCCGGC GAGGAGCATG GCGGGGGCAC CCCCCATTAC
CCCATCCACA AGCCGGAACA GCAGGACTGG ACCTTTGCCG GCCTGTTCGG ACACTACGAC
AAGGGCCAGC TGCAGCGCGG CATGAAGGTC TACACCGAAG TCTGTTCGGC CTGCCATTCG
ATGGAGCTCG TCTCCTTCCG AACGCTTGAG AACCTGGGAT ACTCCGAAGC CCAGGTGAAA
GCCTTCGCGG CGAATTATGA GGTCGAGGAT GGGCCAAAAG CGGATGGCGA GATGTTTACC
CGCAAGGCCG TTCCATCCGA CTACTTTCCG TCGCCCTTCC CGAACAAGGA AGCCGCTGCC
GCATCGAACA ACGGCGCCGC ACCGCCGGAC TTCTCGCTCA TCGCCAAGGC GCGCGGCATT
GAACGCGGTT TCCCGCAGTT CGTCTTCGAT ATGTTCTGGC CCTACCAGGA GGGCGGTCCT
GACTACATCC ATGCGCTTCT GACCGGCTAC CAGGATCCGC CGGCGGGTGT GGAAGTGGCT
GAAGGTACCC ATTACAACCC GTATTTCGCC AGTGCCGCGG CCTTGGCGAT GGCGCCGCCG
CTCTCCGACG ATCAGGTAAC CTATGACGAC GGCGCCCCCC AGACCGTCGA CCAGTACTCC
AAGGATGTCT CGGCGTTCCT GATGTGGGCC GCTGAGCCGC ATCTGGAAGA TCGCAAGCGT
ACTGGCTTCA TGGTCATGGT GTTCCTGCTC ATCTTCACTG GCCTCATTTA CCTGACGAAG
AAGTCGGTCT ACGCCAACAA GGAACATTGA
 
Protein sequence
MKKLVTGILS LAVVAGLGFG AAIAQDEAAG EEHGGGTPHY PIHKPEQQDW TFAGLFGHYD 
KGQLQRGMKV YTEVCSACHS MELVSFRTLE NLGYSEAQVK AFAANYEVED GPKADGEMFT
RKAVPSDYFP SPFPNKEAAA ASNNGAAPPD FSLIAKARGI ERGFPQFVFD MFWPYQEGGP
DYIHALLTGY QDPPAGVEVA EGTHYNPYFA SAAALAMAPP LSDDQVTYDD GAPQTVDQYS
KDVSAFLMWA AEPHLEDRKR TGFMVMVFLL IFTGLIYLTK KSVYANKEH