| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1510 |
|---|
| Symbol | |
|---|
| ID | 5322368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1591199 |
|---|
| End bp | 1592512 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640790457 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001327189 |
|---|
| Protein GI | 150396722 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.993949 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.740709 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCCG TTTCCCAGCA ATCTTCACTC GGTGAGCAGT CATCCGGGCA CAGCAATCAG
GTCTCGGGTG CCGCGCGCCT CGGAATGGGC CTCGTCGAAT TCATCGTCAC CATAGCGGTC
ATGACCGCAA GCATCGCGCT GGCGATCGAC AGCATGCTGC CGGCTTTGCC GGCCATCGGC
CGGACGCTCA ACGTTGCCAA TGCCAACGAC ACGCAACTCG TGATCGGCGT CTTCTTTCTT
GGATTCGGTC TCTCCCAGAT CTTTTTCGGA AGCCTCTCCG ATACATTAGG TCGCCGGTCG
GTGCTGCTTG CGGGCCTTGC CCTCTTCAGC CTGTCGATGT TCGCCGCCTC CTGGGTCGAA
AGCATCGAAG CGCTGCTGTT GCTCCGCTTC GTTCAGGGTA TCGGCGGTGC CGCCGTGCGC
ATTACGACCA TGGCGATCGT CCGCGACTGT TTCGGGGGCC GTGAGATGGC GCGCGTCATG
TCCTATGTCA TGATCGTCTT CATGATCGTG CCGATCGTCG CCCCGACGCT TGGCCAGCTG
GTGATCGCCT ATGCCGATTG GCACTGGATC TTCATCCTGA TCGGCGTCGT CGGCGCGGCC
CTTTTCGTTT GGGCACTTAC CCGAATGAAA GAGTCGCTGC CGAGGGAGGA GCGCCTGCCG
CTTTCAGTCG GCGCGGTTTT GTCCGGTTTT CGTACGGTCC TTACAAACCG CATCACCTGT
GGCTACATGA TCGGTATGAC TCTGTTCACG GCCGTCATTT GCGCCTATGT CGTCAGCGTC
CAGCAGGTCT TCGGTGAAGT CTACAATCTC AGCGACTGGC TGCCGATCGC CTTTGCGGGC
ACCGCGGGCG GCATTGCGGT CGCGAACTTC GCCAATGGCT ATTTCGTGCG CAGTTTCGGA
ATGCGGCGCA TCTCGCACAC AGCCATGATC CTCTTCACCG TCGTCGCGGC AATCGGATAC
GTTCTTTCGC TCGCGGGCAC TCCGGCTTTC ACCATCAGCT ACCTGCTGTT TTCTCTTTTG
CTGATGTTCT TTGCCGTCAT CGCCACCAAC TTCACCGCCA TAAGCCTCGA ACCCATGGGG
CATCTCGCGG GAACAGCAAC CGCGATCACC GGTTTCGTCT CGACCACCGG CGGTGCGCTG
ATCGGCGGCG CCGTCGGCCA GCTCTTCAAC GGCACGCTGC AGCCACTCTT CGGCGGCTAC
GCTCTTTTCG GAGTGCTGAC CATCCTCGCA ACGCTCTGGG CCGAAAACGG GAAGCTGTTC
ACCCATCCGG GCGATAGCGA TACGACGCAC GAACACGGCG GCGGCCATTT GTGA
|
|---|
| Protein sequence | MSSVSQQSSL GEQSSGHSNQ VSGAARLGMG LVEFIVTIAV MTASIALAID SMLPALPAIG
RTLNVANAND TQLVIGVFFL GFGLSQIFFG SLSDTLGRRS VLLAGLALFS LSMFAASWVE
SIEALLLLRF VQGIGGAAVR ITTMAIVRDC FGGREMARVM SYVMIVFMIV PIVAPTLGQL
VIAYADWHWI FILIGVVGAA LFVWALTRMK ESLPREERLP LSVGAVLSGF RTVLTNRITC
GYMIGMTLFT AVICAYVVSV QQVFGEVYNL SDWLPIAFAG TAGGIAVANF ANGYFVRSFG
MRRISHTAMI LFTVVAAIGY VLSLAGTPAF TISYLLFSLL LMFFAVIATN FTAISLEPMG
HLAGTATAIT GFVSTTGGAL IGGAVGQLFN GTLQPLFGGY ALFGVLTILA TLWAENGKLF
THPGDSDTTH EHGGGHL
|
|---|
| |