Gene Smed_1479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1479 
Symbol 
ID5322337 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1566368 
End bp1566775 
Gene Length408 bp 
Protein Length135 aa 
Translation table11 
GC content63% 
IMG OID640790427 
ProductNUDIX hydrolase 
Protein accessionYP_001327159 
Protein GI150396692 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1051] ADP-ribose pyrophosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.142432 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00620383 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCACTGC CCGGTGTTGA CTTCCCCGGT CTCGGCTGTG GTCTGGCGAT TGTAAGGGAT 
GGAAAAATCC TCCTCTGTCG TCGCCTGAAG GCGCCGGAGG CCCGCCACTG GAGCATTGTC
GGCGGCAAAG TCGACCAGAT GGAGCGTGCG CAGGACGCGG CACGGCGTGA AGCGCAGGAG
GAAAGCGGTC TTTCCATCCA TTCGATCCGC TTTCTGTGCA TCAGCGAACA GTTGATCGAG
GCCGAGCGGC AGCATTGGGT CTCGCTGATC TATGTGACGG AGGACTTCTC CGGCGAGCCG
CGCCTCACTG AGCCGGACAA GCTTTCCGAC ATTCGCTGGT TCGACCTGAC CGCCCTGCCC
CAGCCCCTAT CCCGCTTTGC TGCCGACGCA ATTCGCGCGC TCGCCTGA
 
Protein sequence
MALPGVDFPG LGCGLAIVRD GKILLCRRLK APEARHWSIV GGKVDQMERA QDAARREAQE 
ESGLSIHSIR FLCISEQLIE AERQHWVSLI YVTEDFSGEP RLTEPDKLSD IRWFDLTALP
QPLSRFAADA IRALA