| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1477 |
|---|
| Symbol | |
|---|
| ID | 5322335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1563333 |
|---|
| End bp | 1564661 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640790425 |
|---|
| Product | peptidase M23B |
|---|
| Protein accession | YP_001327157 |
|---|
| Protein GI | 150396690 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.707432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0152979 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCTGCTG GTTCGGAAAA CGTCTTCGCG AAGCGTAGGC AAAGCCATGT CCTGATTCTG
GCGAGCGGCG ACAGGGTTCG GCACATGACG GTCCGTCCAT GGATGGCTGC GCTGATCACC
TGCTTCGCCG GCGTGTTCGG CACTGGATAT CTTGCAGCGA CAACCTACCT CGTGCTTCGC
GACGACCTGA TTGGCGGAAC GATCGCGCGG CAGGCGCGGA TGCAGCACGA GTACGAGGAC
CGGATCACTG CACTGCGCGC ACAGGTGGAT CGTGTGACGA GCCGTCAATT GCTGGACCAG
CAGATTGTCG AGGAAAAGGT CGAAAAACTG CTGCAGAGGC AATTGGAACT GACCTCCAGG
AGCGCAAAGT TCGGAGAGTT CTCGGAAGCC GGCGACGCTT TTTCAGATAC GGGGAAGGAT
GACGTTTCGC CGGGCACTGG GTCGCTGGGG GACGGCAATC AGGCAGGAAC TGAGACCGGC
GTCAAGGCAA TCGAGGCGAT GATGGGCATT GCCGGCAACG ATATTGGTCG CTCTCCTCAC
TCCGCCGCAC TCGGCTATGC CCCGACCTCC GCGGGAAGTT CCGGTGGCGA GAGCGCTTCC
GACCGTGCCG ATCGAGTTTT TTCCAGTGCT ACGCTTTCAC TCAAGGGATT GGAACTCGAA
CAGATGGCGC AGATGAAGCA CATGACGGAC ACGGCGCTCA GGACGTCGGA GACGATCAGG
GCGATCGTCG AAGATGCGGG TTTCACAATG CCGGTAGTCG AGGAAGCGCT CAACGTGGAC
AGGTCGGCAG AGCCGGGTAT CGGCGGTCCT TTCATCGAAC CGCAGAACGG AGACGGGTTC
GACCGATCGC TGCTCGACCT CGACACCGCT CTTGTGAAAC TCGAGCGGAC CCGCGAGGCC
GCAAAAAGGC TTCCTCTCGC CAGTCCGGCA CCGGCAGCCG ACGTCACCAG CAGCTTCGGA
AACCGCGTGG ATCCTTTCCT CGGCCGATTG GCGCTGCATG CCGGGATAGA TTTCCGGACG
GCGACCGGCA CCCGCGTCCG CGCGACCGCC GGCGGCATCG TCACGGCAGT AGGCTCGGCC
GGCGGCTATG GAAACATGAT TGAGATCGAT CACGGCAATG GCGTGTCGAC CCGCTATGCG
CATCTTTCGA CCATTCTCGT CGATGTCGGC GAGGAAGTGA AGGCAGACGC GGTCATCGCC
AAGTCGGGAA GCACGGGACG ATCGACCGGA CCGCATCTTC ATTACGAGGT CCGTCTGAAC
GGGCGGCCCG TCGATCCGGC GCGGTTCCTG AGGGCCGGAA CGGAGCTTTC CGGCTTCCTC
GATCGATAG
|
|---|
| Protein sequence | MSAGSENVFA KRRQSHVLIL ASGDRVRHMT VRPWMAALIT CFAGVFGTGY LAATTYLVLR
DDLIGGTIAR QARMQHEYED RITALRAQVD RVTSRQLLDQ QIVEEKVEKL LQRQLELTSR
SAKFGEFSEA GDAFSDTGKD DVSPGTGSLG DGNQAGTETG VKAIEAMMGI AGNDIGRSPH
SAALGYAPTS AGSSGGESAS DRADRVFSSA TLSLKGLELE QMAQMKHMTD TALRTSETIR
AIVEDAGFTM PVVEEALNVD RSAEPGIGGP FIEPQNGDGF DRSLLDLDTA LVKLERTREA
AKRLPLASPA PAADVTSSFG NRVDPFLGRL ALHAGIDFRT ATGTRVRATA GGIVTAVGSA
GGYGNMIEID HGNGVSTRYA HLSTILVDVG EEVKADAVIA KSGSTGRSTG PHLHYEVRLN
GRPVDPARFL RAGTELSGFL DR
|
|---|
| |