| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1465 |
|---|
| Symbol | |
|---|
| ID | 5322323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1546985 |
|---|
| End bp | 1548226 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640790413 |
|---|
| Product | SufS subfamily cysteine desulfurase |
|---|
| Protein accession | YP_001327145 |
|---|
| Protein GI | 150396678 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.204095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0534707 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACATT CTGTGCCGGT GCCGGCCTAT GACGTAGAAG CGATCCGAAA GGACTTTCCG
ATCCTCTCAA GATCGGTCTA CGGCAAACCG CTCGTCTATC TCGACAACGG CGCATCGGCG
CAGAAGCCGC AGCTCGTCAT CGATGCTGTT TCCAATGCCT ATTCCAACGA GTATGCCAAC
GTCCATCGTG GCTTGCATTT TTTGTCGAAT GCCGCGACGG AGGCTTATGA GCAGGCGCGC
GAAAAGGTAC GCCGTTTCCT GAATGCGCCA TCGGTCGACA ATATCATCTT CACCAAGTCC
TCGACCGAGG CGATCAACAC CGTGGCCTAC GGCTACGGAA TGCCCAGGCT CGGCGAGGGG
GATGAGATCG TAATTTCGAT CATGGAGCAT CACTCCAACA TCGTGCCCTG GCACTTCATA
CGCGAGCGGC AGGGCGCCAA GCTCGTTTGG GCGCCAGTCG ATGGCGATGG CGCGTTTCAC
ATCGAGGATT TCGTCGCGTG CGTGACGGAG CGCACTAAAC TTATTGCCGT CACACACATG
TCGAATGCTC TGGGTACGGT TGTTCCGGTG AAGGAGATTT GCCGCATTGC CCGCGAGCGT
GGAATCCCGG TGCTCATCGA CGGTAGCCAG GGCGCGGTGC ATATGCCCGT CGACGTCCAG
GACATCGATT GCGACTGGTA TGTGATGACT GGTCACAAGC TCTACGGTCC TTCCGGCATC
GGCGTTCTCT ACGGCAAGAC CGAACGGTTG AAGGAAATGC GCCCCTTCAT GGGAGGCGGC
GAGATGATCG AGGAAGTCAC CGAGGAACGC GTCACCTATA ACGATCCGCC CCACCGCTTC
GAGGCCGGCA CGCCGCCGAT CGTCCAAGCG ATCGGGCTCG GCTATGCGCT TGATTACATG
GAAAAGATCG GTCGTGAAGC CATCAGGGCG CATGAGGCGG ATCTGACGAC CTACGCCCGC
GAACGTCTGT CCGGGGTCAA TTCTCTCCGC GTCTTTGGCG ACGCGGCCGG CAAGGGAAGC
ATCTTTTCCT TTGAGCTCGC CGGCATCCAC GCCCACGACG TCTCCATGGT GATCGACCGT
GCCGGCATAG CGGTCAGGGC CGGCACGCAT TGTGCGCAGC CGCTCTTGAA TCGGTTCGGC
GTCACCTCCA CATGCCGAGC GTCCTTCGGT CTCTACAACA CCCGCGCCGA GGTCGACGCG
CTGGCGGACG CGCTGGAACA CGCACGCAAA TTTTTCGCTT AG
|
|---|
| Protein sequence | MEHSVPVPAY DVEAIRKDFP ILSRSVYGKP LVYLDNGASA QKPQLVIDAV SNAYSNEYAN
VHRGLHFLSN AATEAYEQAR EKVRRFLNAP SVDNIIFTKS STEAINTVAY GYGMPRLGEG
DEIVISIMEH HSNIVPWHFI RERQGAKLVW APVDGDGAFH IEDFVACVTE RTKLIAVTHM
SNALGTVVPV KEICRIARER GIPVLIDGSQ GAVHMPVDVQ DIDCDWYVMT GHKLYGPSGI
GVLYGKTERL KEMRPFMGGG EMIEEVTEER VTYNDPPHRF EAGTPPIVQA IGLGYALDYM
EKIGREAIRA HEADLTTYAR ERLSGVNSLR VFGDAAGKGS IFSFELAGIH AHDVSMVIDR
AGIAVRAGTH CAQPLLNRFG VTSTCRASFG LYNTRAEVDA LADALEHARK FFA
|
|---|
| |