| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1452 |
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| Symbol | |
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| ID | 5322310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1532678 |
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| End bp | 1534480 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640790400 |
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| Product | single-stranded-DNA-specific exonuclease RecJ |
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| Protein accession | YP_001327132 |
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| Protein GI | 150396665 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
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| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00256801 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00132955 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACGTTT TGGCGGATCC GATCCAGCGG GCTTTTCTCG GCGTTGAACG CTCTGTAAGC
GGACAACGGT GGGTGTCGCG CCTCGATCAG GCGGGCCAGA ACCGTGCACT GGCCATAAGT
CAGGTTCACG GCTATTCCGA GCTCATCGCG CGCGTGCTTG CCGGGCGTGG GGTCGGACTT
GACGACGCCG GCGCCTTCCT TGATCCGACG CTGCGCGCAC TGATGCCGGA CCCCGATATA
TTGACCGATT GCCGCAAGGC TGCCGAGCGG CTTGCAGATG CGATACGCCG CCGCGAGAAG
ATCGTGGTTT TTGGCGATTA CGACGTGGAT GGTGCGGCTT CAGCAGCGCT GATGGTGCGT
TTCCTGCGCC ATTTCGATCT GACGACCGAG ATATACATCC CCGACCGTAT ATTCGAAGGC
TACGGCCCCA ACCCGCAGGC GATCGAACAG TTGATCGATC GGGGCGCGGA ACTGATCGTC
ACCGTCGACT GCGGTTCCAC CAGTCACGAA TCGTTTGCAG TGGCGGCAGA GCGCGGGACC
GACGTTGTGG TCGTCGACCA CCACCAGGTC GGCTCGACGC TGCCCCCTTG CCATGCACTG
GTCAATCCCA ATCGCGAGGA CGATTTGTCG GGCCAGGGGC ACCTTTGTGC TGCTGGCGTC
GTTTACCTGG TGCTCGTCAA CACATTGCGC GTGCTGCGCC TGAAGGGCGA TTCGCGCGTC
GCGTCCTTCG ACCTCCTTTC GCTGCTCGAC CTTGTGTCGC TCGCGACCGT CTGCGATGTC
GTGCCGCTCA AGGGGCTCAA CCGGGCTTAT GTCGTGAAAG GATTGATTGC TGCACGGCAC
ATGGGCAATG CGGGTCTCGC GGCGCTCCTG CGCAAGGCGG CGATCGGCGG ACCCGTGACG
CCCTATCATC TCGGCTTCCT GCTGGGACCA CGGATAAATG CCGGCGGGCG TATCGGTGAC
GCTGCGCTCG GGAGCCGGCT GCTGACCCTC GATGACGCCG CGGAGGCTGA AATCATCGCC
GGCCAGCTTG ATGAACTCAA TCGCGATCGC CAGGCGATGG AAGCGGCCAT GCTGGCGGAG
GCTGAAGCCG AGGTGCTGGC TGAATACGGG ACAGGCGAGG GCGCGTCCGT AATTATCACT
GCCCGGGAGA ATTGGCATCC CGGGATCGTC GGACTGATTG CCGCACGTAT TAAAGAGAAA
TTCCGTCGGC CGGCCTTCGC TATCGCCTTC GACCCGAACG GTCGAGGCAC CGGATCCGGC
CGTTCGATCA ACGGCTTTGA CATGGGGCGG CTCGTGCGCG CGGCCGTCGA CAGCGGCCTT
CTGATCAAGG GTGGCGGGCA TGCAATGGCT GCCGGGCTGA CGGTCGAGAG AGGTAAGCTC
GGACAACTTC GGCAATTCTT CGAAGAACGC GCCGAAACTG CAGTTCGCGA TCTCGTGGCC
GTCCAAACAC TCAAGGTCGA TGGTGCAATG GCAGCTGCCG GGGCGACGCT GGACCTCGTC
GACCTTCTCG ATCAGGCAGG GCCTTACGGC TCAGGGCATC CGCAGCCGCT CTTCGCCTTC
CCGCAACATC GGCTGCGGGA CAGCAGGCAG GTCGGCGCCA ATCACGTTAA GGTGACTCTC
GAAGGACAGG ACGGCCGTCG AATCGAAGGA ATCGCCTTCC GTGCCACCGA GACGCCGCTG
GGCGCGTTCC TGCTTGGCAA TCGCGGCGCT ACGGTCCATG CCGCGGGATC CGTGTCGGCG
GATCTCTGGC AGGGAACACG CAAGGTGCAG CTGCGCCTGA CGGATGCTGC GAAAGCCCAT
TGA
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| Protein sequence | MDVLADPIQR AFLGVERSVS GQRWVSRLDQ AGQNRALAIS QVHGYSELIA RVLAGRGVGL
DDAGAFLDPT LRALMPDPDI LTDCRKAAER LADAIRRREK IVVFGDYDVD GAASAALMVR
FLRHFDLTTE IYIPDRIFEG YGPNPQAIEQ LIDRGAELIV TVDCGSTSHE SFAVAAERGT
DVVVVDHHQV GSTLPPCHAL VNPNREDDLS GQGHLCAAGV VYLVLVNTLR VLRLKGDSRV
ASFDLLSLLD LVSLATVCDV VPLKGLNRAY VVKGLIAARH MGNAGLAALL RKAAIGGPVT
PYHLGFLLGP RINAGGRIGD AALGSRLLTL DDAAEAEIIA GQLDELNRDR QAMEAAMLAE
AEAEVLAEYG TGEGASVIIT ARENWHPGIV GLIAARIKEK FRRPAFAIAF DPNGRGTGSG
RSINGFDMGR LVRAAVDSGL LIKGGGHAMA AGLTVERGKL GQLRQFFEER AETAVRDLVA
VQTLKVDGAM AAAGATLDLV DLLDQAGPYG SGHPQPLFAF PQHRLRDSRQ VGANHVKVTL
EGQDGRRIEG IAFRATETPL GAFLLGNRGA TVHAAGSVSA DLWQGTRKVQ LRLTDAAKAH
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