Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1414 |
Symbol | |
ID | 5322265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1495463 |
End bp | 1496215 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640790356 |
Product | GntR domain-containing protein |
Protein accession | YP_001327095 |
Protein GI | 150396628 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.455285 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0932364 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAACAAGA GCCTGCTTGA GACCGTGATA TCCGGCACGC CGAAACGGAC GAGCCATGCA CAGGTCGTGG ATCAACTCGG CAAGGCGATT GTTTCAGGCG AATTCCCGGT CGGCAGCATC CTGCCCGGAG ACCCCGATCT GGCGATGCGC TTTCGGGTTT CGCGCACAGT GTTGCGCGAA GCCATGAAGA CGCTTGCAGC CAAGGGCATG ATCGTCCCGC GTGCTCGAAT CGGCACACGC GTCACCCCCC GCAAGGAATG GAACCTCTTC GATAGCGACA TCCTCACATG GCATTTCGCA TGTGGCGTCG ACGAAGATTT TCTCTACCAT CTGAGCGAAG TGCGGCTCGC CTTCGAGACG CATGCTGCGG CTCTGGCGGC GAGAAATGCA TCGGACGCGG AGATCGCGGG GATGATGCGT CTTGCGGTCG CCATGGGGGA CGCAGATCAC ACGCCGGAGA GTCTCGCCAC CGCAGACCTC AAATTCCATC TTTCCGTTAT TGAAGCCTCT GGAAATCCCT TCCTGCGCAC GGTCGGCGGC CTGATCGAGG CCGCCCTTGT CGGCGTCTTC AAGCTCAGTT CACCCACCGC CGAGAAAGGC GGCATCGACG AGGTGGCACG GAACCACATC CGTATCGTCG AGGCGGTCGG CAAACGGGAC GAGGCGACCG CGCGCCTTGC AATGGAGCAC GTGATCAAGG TGGGGCGCGC ACGTATCCGT CAGGCGCTCA GCGGAAGCGT GGCGAAAGCC TGA
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Protein sequence | MNKSLLETVI SGTPKRTSHA QVVDQLGKAI VSGEFPVGSI LPGDPDLAMR FRVSRTVLRE AMKTLAAKGM IVPRARIGTR VTPRKEWNLF DSDILTWHFA CGVDEDFLYH LSEVRLAFET HAAALAARNA SDAEIAGMMR LAVAMGDADH TPESLATADL KFHLSVIEAS GNPFLRTVGG LIEAALVGVF KLSSPTAEKG GIDEVARNHI RIVEAVGKRD EATARLAMEH VIKVGRARIR QALSGSVAKA
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