Gene Smed_1414 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1414 
Symbol 
ID5322265 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1495463 
End bp1496215 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content62% 
IMG OID640790356 
ProductGntR domain-containing protein 
Protein accessionYP_001327095 
Protein GI150396628 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.455285 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0932364 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACAAGA GCCTGCTTGA GACCGTGATA TCCGGCACGC CGAAACGGAC GAGCCATGCA 
CAGGTCGTGG ATCAACTCGG CAAGGCGATT GTTTCAGGCG AATTCCCGGT CGGCAGCATC
CTGCCCGGAG ACCCCGATCT GGCGATGCGC TTTCGGGTTT CGCGCACAGT GTTGCGCGAA
GCCATGAAGA CGCTTGCAGC CAAGGGCATG ATCGTCCCGC GTGCTCGAAT CGGCACACGC
GTCACCCCCC GCAAGGAATG GAACCTCTTC GATAGCGACA TCCTCACATG GCATTTCGCA
TGTGGCGTCG ACGAAGATTT TCTCTACCAT CTGAGCGAAG TGCGGCTCGC CTTCGAGACG
CATGCTGCGG CTCTGGCGGC GAGAAATGCA TCGGACGCGG AGATCGCGGG GATGATGCGT
CTTGCGGTCG CCATGGGGGA CGCAGATCAC ACGCCGGAGA GTCTCGCCAC CGCAGACCTC
AAATTCCATC TTTCCGTTAT TGAAGCCTCT GGAAATCCCT TCCTGCGCAC GGTCGGCGGC
CTGATCGAGG CCGCCCTTGT CGGCGTCTTC AAGCTCAGTT CACCCACCGC CGAGAAAGGC
GGCATCGACG AGGTGGCACG GAACCACATC CGTATCGTCG AGGCGGTCGG CAAACGGGAC
GAGGCGACCG CGCGCCTTGC AATGGAGCAC GTGATCAAGG TGGGGCGCGC ACGTATCCGT
CAGGCGCTCA GCGGAAGCGT GGCGAAAGCC TGA
 
Protein sequence
MNKSLLETVI SGTPKRTSHA QVVDQLGKAI VSGEFPVGSI LPGDPDLAMR FRVSRTVLRE 
AMKTLAAKGM IVPRARIGTR VTPRKEWNLF DSDILTWHFA CGVDEDFLYH LSEVRLAFET
HAAALAARNA SDAEIAGMMR LAVAMGDADH TPESLATADL KFHLSVIEAS GNPFLRTVGG
LIEAALVGVF KLSSPTAEKG GIDEVARNHI RIVEAVGKRD EATARLAMEH VIKVGRARIR
QALSGSVAKA