Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1409 |
Symbol | trpC |
ID | 5322260 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 1490892 |
End bp | 1491707 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640790351 |
Product | indole-3-glycerol-phosphate synthase |
Protein accession | YP_001327090 |
Protein GI | 150396623 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0134] Indole-3-glycerol phosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.827257 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.309445 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGACA TCCTGCGTCG GATCGAAGCC TATAAGCGCG GCGAGATCGC GGCCGCGAAA GTACGTATTC CGCTGGCCGA ATTGAAGGCG CGGATTGCCG AACAGTCGCC GCCGCGCGGA TTCCGTGCTG CACTCGGGGC GCACCGGGAA AAAGGCGACT TCGGCTTGAT CGCCGAAATC AAGAAGGCGA GCCCGTCGAA AGGATTGATC CGGCCGGATT TCGATCCTCC GGAACTGGCG AAGGCCTATG CCGCTGGCGG CGCTGCCTGT TTGTCCGTCC TTACCGACGC GCCGAGCTTC CAGGGTGCAC CGGAGTTCCT GACGAAGGCA CGCGAGGCCT GCCCGCTCCC GGCGCTGCGC AAGGACTTCA TGTTCGACAC CTATCAGGTT TTCGAAGCGC GGGCCTGGGG TGCCGATTGC ATTCTGCTTA TCATGGCGTC GCTTGCCGAC GATGATGCTC GCCGGCTGGA AGAAGCTGCA TTCGCACTCG GCATGGACGT CCTTGTCGAA GTACACGACG CGGAGGAAAT GGATAGAGCA CTTCGCTTGT CATCTCCGCT CGTCGGTATC AATAACCGTA ATCTCAGGAC GTTCGAGGTT GACCTTGCCG TCTCCGAAAG GCTCGCGACG ATGGTCTCCT CCGACCATCT CCTGGTCGGC GAGAGCGGCG TTTTCACTCA CGAAGACTGC CGACGCCTTG AGAAGAGCGG GATTACCACC TTCCTGGTCG GTGAAAGCCT GATGAGGAAG GACGACGTCG AGGCGGCAAC GCGTGCGCTG CTGACCGGCT CCGCAAACAT TCTGGCGGCA GAGTGA
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Protein sequence | MTDILRRIEA YKRGEIAAAK VRIPLAELKA RIAEQSPPRG FRAALGAHRE KGDFGLIAEI KKASPSKGLI RPDFDPPELA KAYAAGGAAC LSVLTDAPSF QGAPEFLTKA REACPLPALR KDFMFDTYQV FEARAWGADC ILLIMASLAD DDARRLEEAA FALGMDVLVE VHDAEEMDRA LRLSSPLVGI NNRNLRTFEV DLAVSERLAT MVSSDHLLVG ESGVFTHEDC RRLEKSGITT FLVGESLMRK DDVEAATRAL LTGSANILAA E
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