Gene Smed_1409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1409 
SymboltrpC 
ID5322260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1490892 
End bp1491707 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content61% 
IMG OID640790351 
Productindole-3-glycerol-phosphate synthase 
Protein accessionYP_001327090 
Protein GI150396623 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0134] Indole-3-glycerol phosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.827257 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.309445 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGACA TCCTGCGTCG GATCGAAGCC TATAAGCGCG GCGAGATCGC GGCCGCGAAA 
GTACGTATTC CGCTGGCCGA ATTGAAGGCG CGGATTGCCG AACAGTCGCC GCCGCGCGGA
TTCCGTGCTG CACTCGGGGC GCACCGGGAA AAAGGCGACT TCGGCTTGAT CGCCGAAATC
AAGAAGGCGA GCCCGTCGAA AGGATTGATC CGGCCGGATT TCGATCCTCC GGAACTGGCG
AAGGCCTATG CCGCTGGCGG CGCTGCCTGT TTGTCCGTCC TTACCGACGC GCCGAGCTTC
CAGGGTGCAC CGGAGTTCCT GACGAAGGCA CGCGAGGCCT GCCCGCTCCC GGCGCTGCGC
AAGGACTTCA TGTTCGACAC CTATCAGGTT TTCGAAGCGC GGGCCTGGGG TGCCGATTGC
ATTCTGCTTA TCATGGCGTC GCTTGCCGAC GATGATGCTC GCCGGCTGGA AGAAGCTGCA
TTCGCACTCG GCATGGACGT CCTTGTCGAA GTACACGACG CGGAGGAAAT GGATAGAGCA
CTTCGCTTGT CATCTCCGCT CGTCGGTATC AATAACCGTA ATCTCAGGAC GTTCGAGGTT
GACCTTGCCG TCTCCGAAAG GCTCGCGACG ATGGTCTCCT CCGACCATCT CCTGGTCGGC
GAGAGCGGCG TTTTCACTCA CGAAGACTGC CGACGCCTTG AGAAGAGCGG GATTACCACC
TTCCTGGTCG GTGAAAGCCT GATGAGGAAG GACGACGTCG AGGCGGCAAC GCGTGCGCTG
CTGACCGGCT CCGCAAACAT TCTGGCGGCA GAGTGA
 
Protein sequence
MTDILRRIEA YKRGEIAAAK VRIPLAELKA RIAEQSPPRG FRAALGAHRE KGDFGLIAEI 
KKASPSKGLI RPDFDPPELA KAYAAGGAAC LSVLTDAPSF QGAPEFLTKA REACPLPALR
KDFMFDTYQV FEARAWGADC ILLIMASLAD DDARRLEEAA FALGMDVLVE VHDAEEMDRA
LRLSSPLVGI NNRNLRTFEV DLAVSERLAT MVSSDHLLVG ESGVFTHEDC RRLEKSGITT
FLVGESLMRK DDVEAATRAL LTGSANILAA E