Gene Smed_1305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1305 
Symbol 
ID5322153 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1397752 
End bp1398783 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content63% 
IMG OID640790247 
ProductDNA polymerase LigD ligase region 
Protein accessionYP_001326990 
Protein GI150396523 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID[TIGR02776] DNA ligase D
[TIGR02779] DNA polymerase LigD, ligase domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0414241 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCTATA AGCCGAAAGA GTCAATTCGG CTTTTCGCGG GCCTGTGCGT TAATGGCCTG 
ATGGCCAAAG CATCCTCGAA GAAGCCTCGC GATGTCGCTC CAATGGATCC CATGCCGGCG
CGCGTCGATC CCTGCCTTGC CACTCTCGTG GATAAGCCGC CAATCGGCCC CGACTGGGCC
TATGAGGTGA AGTGGGACGG GTACCGGCTG TCCGTGCACA TCGAGCCTGG CCGGGTGCGA
ATACTCACGC GCGGTGGCTA CGACTGGACC GAGCGCTTCC CAACAATCGC AGACGACGCG
CGGCGCCTCG CCGTGAAAAC GGCGATCTTC GACGGGGAGG CGGTTGTTCT CGACGAGCAG
GGGCGGTCCG ATTTCGGCAT GCTGCAGCGG GCGCTCGGGC GACTTCCTTC GGCGGTCGAA
GCCGGCGCCA TCGTCTTATA TGCCTTTGAC CTCCTCTATC TTGACGGCCG CGATCTTCGC
CGTCTGCCGT TCGGAGAGCG CCGGCGATTG CTTGAGCCGC TCGTTGCAGG TCGGGAAGGG
GCCGTCCGCC TTTCTGAGGA GGTTCAGGCT GATGGCGACG AGTTCTTTCG CGTTGCGTGC
GAACACGGCC TTGAGGGCAT CATCGCCAAG CACATTGAGA AGCCATACCG CTCAGGTCGA
GGCGAGTGGT GGCAGAAGAT CACCTGCAAG CGCCGGGATA GCTTTGTGAT CGTCGGCTTC
GAGCCGTCGA CAGTGCCAGG TCATCTCGGG CGGCTTCTCC TCGCCGCGCG CAAGGACGGC
GAGCTCGTCT ATGTCGGCGG CTGCGGAACT GGCTGGTCAC ATGAGCTTTC GCGTGAGCTG
CGTAATCTGC TCGAAGGGAT GGCGACAAAA ATCCCGGCGG TTGCGCTGCG GAGGAAGGGC
GCCGTCTTTG TCGAGCCGGT GCTCGTCGCG GAGGTTGAGT ATCGCGCCTG GACAGACGAC
GGAAAGCTAA GGCATGCCTC GTTCAAGGGG ATCAGGGAGC GGGAGGATGA GGCGGGGGTG
TATAGTCTGT GA
 
Protein sequence
MFYKPKESIR LFAGLCVNGL MAKASSKKPR DVAPMDPMPA RVDPCLATLV DKPPIGPDWA 
YEVKWDGYRL SVHIEPGRVR ILTRGGYDWT ERFPTIADDA RRLAVKTAIF DGEAVVLDEQ
GRSDFGMLQR ALGRLPSAVE AGAIVLYAFD LLYLDGRDLR RLPFGERRRL LEPLVAGREG
AVRLSEEVQA DGDEFFRVAC EHGLEGIIAK HIEKPYRSGR GEWWQKITCK RRDSFVIVGF
EPSTVPGHLG RLLLAARKDG ELVYVGGCGT GWSHELSREL RNLLEGMATK IPAVALRRKG
AVFVEPVLVA EVEYRAWTDD GKLRHASFKG IREREDEAGV YSL