Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1305 |
Symbol | |
ID | 5322153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1397752 |
End bp | 1398783 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640790247 |
Product | DNA polymerase LigD ligase region |
Protein accession | YP_001326990 |
Protein GI | 150396523 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0414241 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCTATA AGCCGAAAGA GTCAATTCGG CTTTTCGCGG GCCTGTGCGT TAATGGCCTG ATGGCCAAAG CATCCTCGAA GAAGCCTCGC GATGTCGCTC CAATGGATCC CATGCCGGCG CGCGTCGATC CCTGCCTTGC CACTCTCGTG GATAAGCCGC CAATCGGCCC CGACTGGGCC TATGAGGTGA AGTGGGACGG GTACCGGCTG TCCGTGCACA TCGAGCCTGG CCGGGTGCGA ATACTCACGC GCGGTGGCTA CGACTGGACC GAGCGCTTCC CAACAATCGC AGACGACGCG CGGCGCCTCG CCGTGAAAAC GGCGATCTTC GACGGGGAGG CGGTTGTTCT CGACGAGCAG GGGCGGTCCG ATTTCGGCAT GCTGCAGCGG GCGCTCGGGC GACTTCCTTC GGCGGTCGAA GCCGGCGCCA TCGTCTTATA TGCCTTTGAC CTCCTCTATC TTGACGGCCG CGATCTTCGC CGTCTGCCGT TCGGAGAGCG CCGGCGATTG CTTGAGCCGC TCGTTGCAGG TCGGGAAGGG GCCGTCCGCC TTTCTGAGGA GGTTCAGGCT GATGGCGACG AGTTCTTTCG CGTTGCGTGC GAACACGGCC TTGAGGGCAT CATCGCCAAG CACATTGAGA AGCCATACCG CTCAGGTCGA GGCGAGTGGT GGCAGAAGAT CACCTGCAAG CGCCGGGATA GCTTTGTGAT CGTCGGCTTC GAGCCGTCGA CAGTGCCAGG TCATCTCGGG CGGCTTCTCC TCGCCGCGCG CAAGGACGGC GAGCTCGTCT ATGTCGGCGG CTGCGGAACT GGCTGGTCAC ATGAGCTTTC GCGTGAGCTG CGTAATCTGC TCGAAGGGAT GGCGACAAAA ATCCCGGCGG TTGCGCTGCG GAGGAAGGGC GCCGTCTTTG TCGAGCCGGT GCTCGTCGCG GAGGTTGAGT ATCGCGCCTG GACAGACGAC GGAAAGCTAA GGCATGCCTC GTTCAAGGGG ATCAGGGAGC GGGAGGATGA GGCGGGGGTG TATAGTCTGT GA
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Protein sequence | MFYKPKESIR LFAGLCVNGL MAKASSKKPR DVAPMDPMPA RVDPCLATLV DKPPIGPDWA YEVKWDGYRL SVHIEPGRVR ILTRGGYDWT ERFPTIADDA RRLAVKTAIF DGEAVVLDEQ GRSDFGMLQR ALGRLPSAVE AGAIVLYAFD LLYLDGRDLR RLPFGERRRL LEPLVAGREG AVRLSEEVQA DGDEFFRVAC EHGLEGIIAK HIEKPYRSGR GEWWQKITCK RRDSFVIVGF EPSTVPGHLG RLLLAARKDG ELVYVGGCGT GWSHELSREL RNLLEGMATK IPAVALRRKG AVFVEPVLVA EVEYRAWTDD GKLRHASFKG IREREDEAGV YSL
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