| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1263 |
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| Symbol | |
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| ID | 5322110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1356867 |
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| End bp | 1358270 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640790204 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001326948 |
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| Protein GI | 150396481 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0813234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.914064 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGACTG CGACCAAAGA TCTCGTGCTT CCGCAGGGCG ACAATTCGTG GGCCACGCAT
TTTCGTGCGA GCCTTTATCT GGGTGTGCCC TTCATCGGCG CGCAGCTCGC GCAGCTGGCG
ATCAATACCA CGGACGTGCT CATGGTCGGT CAGTTGGGGG CGACCCAGCT TGCATCGATC
ATCCTTGCGA CCCAGGTCTT TTTCACGATC TTCATCTTCG GCAGCGGGTT TGCCAATGCA
GTGGTCCCGA TGGTCGCTCA GGCGCAGGGG CGGGGCGACC ATATCTCCGT CCGGCGTTCG
GTGCGGATGG GCATGTGGGT GGTGCTGCTT TACGGCGTAC TGACGGCGCC GATCCTCTGG
ATGGCCGAGC CGATCCTCCT CTTTGCCGGA CAGGAACCCG AAGTCGCGGC ACTTGCCGGG
GAATATCTCC ATATAGCCCA GTGGGCGATC TTCCCGAGCC TTCTGTTCAT GGTGCTCAGA
GCATTCCTGA GCGGCCTCGA ACGGGCGGGG GTGATCCTCT ATGTAACGCT CGTGACCCTG
GTTCTGAATG CCGCGCTTTG TTACGTTCTC ATTTTCGGCC ATTTCGGCTT TCCGGAACTG
GGGATCTTCG GCGCGGCCGT TGCCGCCCTT GGCGTAGCGC TGCTCGGCGC GGCCCTGACG
ATCGGCTATA TCCGCCGGCA ACCGGAACTT CACCGCTATG AGCTTTTCGT CCGCTTCTGG
CGACCGGACT GGCCGGCCTT TGGCGAGGTG ATCTATCTCG GCATTCCGAT CTCGATTACA
ATTCTCGCCG AAGTGAGCCT CTTTACCGTC GCCTCGCTGC TGATGGGCAC GATCGGCACC
ATAGAACTGG CAGCCCATGG CATAGCGCTC CAGTTCGCCT CCATCGCCTT CATGATCCCT
CTTGGGCTGG CACAGGCCGG AACGGTGCGG ATCGGCTTGG CCTATGGCAG CGGCGACATG
GTCGGCGTGA AGCGTGCCGC GGTTGCGGTG CTAACGCTCG GCATCGGCTT TGCTGCCGTC
GGCAGCACGA TTTTCGCGCT GTTTCCGCAT GATCTCGCGT CGCTCTATCT CGATACGAGG
CGACCGGATG CTGCCGAAGT TCTCGCCTTT GCCGGACCGC TGATCGTCAT TGCCGGCGCC
TTCCAGCTCG TAGATGGCCT TCAGGCGATC GCCGCTGGTA TGCTGCGCGG GTTGAAGGAC
ACAACAGTGC CGATGATCCT GGCGATGATC GCCTATTGGC CGATAGGCTT CTTCTGCGCC
TGGATCTTTG CTTTCCCGCT GAATTTCGGC GGTGTCGGCG TGTGGTTCGG CTTCGTCCTT
GGCCTTGCAT CGGCGGCGCT CTTGCTCAAC TGGCGCTTCT TTCGACTGCT TCGATCGGTC
AGCAGGGTGC CGGCTGCGTC TTAG
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| Protein sequence | MLTATKDLVL PQGDNSWATH FRASLYLGVP FIGAQLAQLA INTTDVLMVG QLGATQLASI
ILATQVFFTI FIFGSGFANA VVPMVAQAQG RGDHISVRRS VRMGMWVVLL YGVLTAPILW
MAEPILLFAG QEPEVAALAG EYLHIAQWAI FPSLLFMVLR AFLSGLERAG VILYVTLVTL
VLNAALCYVL IFGHFGFPEL GIFGAAVAAL GVALLGAALT IGYIRRQPEL HRYELFVRFW
RPDWPAFGEV IYLGIPISIT ILAEVSLFTV ASLLMGTIGT IELAAHGIAL QFASIAFMIP
LGLAQAGTVR IGLAYGSGDM VGVKRAAVAV LTLGIGFAAV GSTIFALFPH DLASLYLDTR
RPDAAEVLAF AGPLIVIAGA FQLVDGLQAI AAGMLRGLKD TTVPMILAMI AYWPIGFFCA
WIFAFPLNFG GVGVWFGFVL GLASAALLLN WRFFRLLRSV SRVPAAS
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