Gene Smed_1245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1245 
Symbol 
ID5322092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1335436 
End bp1336557 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content63% 
IMG OID640790186 
ProductNADH:flavin oxidoreductase/NADH oxidase 
Protein accessionYP_001326930 
Protein GI150396463 
COG category[C] Energy production and conversion 
COG ID[COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.939474 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.298722 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTCTC TCTTTGACCC GATTTCGATC GGTGACATCG TACTCAAGAA CCGCGTCGTA 
ATGGCACCTC TGACCCGGAA CCGTTCGCCC CAGGCCGTGC CCAATGATCT CAACGTCGCC
TATTACGAGC AGCGCGCATC CGCCGGCCTG CTGATCACCG AGGCGACGGC AATAAGTCAC
CAGGGCCAGG GCTACGCAGA CGTGCCGGGC CTCTACAAGC CGGAAGCCCT AGCCGGCTGG
CGCAAGATCA CCGATGCCGT TCACAAAGCC GGCGGCAGGA TCGTCGTGCA GATGTGGCAT
GTCGGGCGGA TCTCGCATGA GTCGCTTCAG CCGCAGGGCG GCAAGCCTGT TGCGCCGTCG
GCCATCCGTG CCAAATCGAA GACCTATCTG ATCAACCCCG ATGGAACCGG GACCTTTGCC
GAAACCTCCG AACCGCGAGC GCTCGAATTG GCGGAAATCC CCGGCATCGT CGAGGATTAT
TGCAAGGCCG CCCGCGCCGC GATCGAGGCG GGCTTCGATG GCGTCGAGAT TCATGCTGCC
AACGGCTATC TGATCGACCA GTTCCTGCGC TCCGGCTCAA ACGAACGCAC GGACGCCTAT
GGCGGCTCGA TCGAGAACCG CGCCCGCTTC CTCTTCGAGG TCGTAGACGC CGTTACCGGG
GAGATCGGCG CCGGTCGGGT GGGAATCCGC ATCTCTCCCG TGACCCCTGC AAACGACGCT
TTCGATCCGG ATCCGCAGCC CCTCTTCACC TATGTCGTCG AAGGACTGGC TCGTTACCCG
CTCGCATATG TGCACGTCAT CGAAGGCGCC ACGGGCGGAG CACGCGATCA CCAGCAGGGC
GATCGGCCCT TCGACTACGC AGCCCTGCGT AACGCCTATG CAGCAGCCGG GGGTAAGGCG
GCCTGGATGA CGAACAACGG TTACGATCGC GATCTGGCGC TGAGGACCGT CGAAAGCGGC
GAAGCCGACC TCGTTGCATT CGGCAAACCC TTCATCGCCA ACCCGGACCT CGTACGCCGG
CTTAGAGACA ATGTGGCCCT GAATGCACCG GATCAGGCAA CCTTCTATGG CGGCGGTGCC
AAAGGCTACA CGGACTATCC GTCGCTCGAA AACGTCGCCT GA
 
Protein sequence
MASLFDPISI GDIVLKNRVV MAPLTRNRSP QAVPNDLNVA YYEQRASAGL LITEATAISH 
QGQGYADVPG LYKPEALAGW RKITDAVHKA GGRIVVQMWH VGRISHESLQ PQGGKPVAPS
AIRAKSKTYL INPDGTGTFA ETSEPRALEL AEIPGIVEDY CKAARAAIEA GFDGVEIHAA
NGYLIDQFLR SGSNERTDAY GGSIENRARF LFEVVDAVTG EIGAGRVGIR ISPVTPANDA
FDPDPQPLFT YVVEGLARYP LAYVHVIEGA TGGARDHQQG DRPFDYAALR NAYAAAGGKA
AWMTNNGYDR DLALRTVESG EADLVAFGKP FIANPDLVRR LRDNVALNAP DQATFYGGGA
KGYTDYPSLE NVA