| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1237 |
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| Symbol | |
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| ID | 5322084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1323506 |
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| End bp | 1325914 |
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| Gene Length | 2409 bp |
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| Protein Length | 802 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640790178 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001326922 |
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| Protein GI | 150396455 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.200313 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGCAG GTTCGACGAA ACCGCCGCTG ATGTCGGCCA CGTCTCCGGC CGAGGTTTTC
CGTCGCGTCT TTTCGGGCGC TATCCGCTAT CTGCCAAAAC TCGGCATCCG AGTCCTCCGC
CCGCATTTGT GCCTTCGACG TGCGGCGCTT CGTTGGATGG CTTTGGCGCT CTGTTGCGTG
CTTACGCTCT TCGGAACTGC GGCTGCGGCA GAAGAGAGGA AGGCTCCGGG CGACCCGCTG
ATCGCAATTC ATGACGGCTT CGCGGACGAG AAAACCTGCT CATCCTGTCA TGCCGAACAG
GCGGCCGCTT TCGCCGCGTC GCATCACGCG AGGGCGATGG CTGTCGCCGA TGAACAGTCG
GTACGGGCAG ACTTCAACGG CACCCGGTTC GAGGACGTCG GTATCGCAGC GGACTTCTTT
CGCCGAGATG ACCGCTTCTT CGTCCGCACC GAAGGGCCGG ATGGCAGGCA ATCGGATTAC
GAAGTCAAAT ATACATTCGC CTATGAGCCT CTACAGCAGT ACCTGATCGA TCTCGGCGGC
GGCAGGCTGC AGGCTCTCGA CATCGCCTGG GATACGCGAA AGCAGACCTG GTTCTGGCTG
GGCGAAGGCA GCGCGGCAAA ACCGGGCTCC ACATTTCATT GGACGGGGCC GTTCTACCGC
TGGAACCGCA CCTGCATCGA CTGTCATTCC ACCGACCCAC GGGCCAATTT CCAGCCGCAG
GCGAACGAGT ACAAGTCGTC CTATGTGGCG ACCGGCATCG GCTGCCAGTC CTGCCATGGC
GGCGGCGCAA AGCACGTCGA ATGGGCCAAG ACCAAAGCGG GAGGTGTCTC GGCGGACATG
GCAGATCCAA GCCTGGCGAA GGTCGACGTG AACACCTGCT TCGCCTGCCA CGCGCGGCGC
ACCAGACTTG TCGACGGCTA CCGGCCGGGA GGAGCCTTTC TCGACCATTT TTCCCCCGCG
TTGCTTCGCA GCGACCTATA TTTCCCGGAC GGACAGATCC TCGACGAGGT TTTCGAATAC
GGCTCCTTCC AGCAGAGCAA GATGGCAAAG GCCGGCGTCA CCTGTTTCGA CTGCCACAGG
GCACACGAAG GTACCGTAAA GGCCGCCGGT AACGCGCTGT GCACCCAATG TCACGCCGAG
ACCGCGCCGG AGCGTTTTGC CAGCAACGAT CCGAGCGGCG CGTTCGATAC GCCCGCACAC
ACGCATCACC CCGAAGGCTC AGCTGGCGCT CTTTGTGCCA ACTGCCACAT GCCGGAACGT
ACCTACATGA AGGTGGACCC CCGGCGCGAC CACTCTTTCG TGATCCCTCG CCCCGACCTT
TCCGCGATCT ACGGCACCCC GAATGCATGC ATCGCATGCC ATGTCGGCAA AACGAATGCG
TGGGCGTCCG AGAGTATGGA CGAATGGTAT GGAAAGGGAT GGCGTGAACG CCCGACAATC
GCCCATGCCT TCGCAGCAGC GGCGCGGGAT GATGCTGCCG CAATAGAGAA GCTGCGCGGA
TTTCTGGCCG ACCGCCAGCA ACCGGGCATC GTCAGGGGCA GCGCAATCGG AGAAATGACA
AGGCTCGATG GGGCAGCCGC GGCCGCGGAC GTCAGAGTGG CCGCGGCGGA CCCCGATCCG
CTCGTCCGGC TGGGAGCAGC CGAGGCGGCT GCCAACCTGC CGCCCGAGCT GCGGCCAGAC
GTGATCGGCG GCCTGCTTGG CGACGAAACC CGAGCTGTCC GGGTGGCCGC CATCAGGGTC
CTTGGCGCCA CTCCCTCACT GGAGCTTCTC GGCGATCGAC GGCGGGCCTT CGAGGCCGCC
GCCGGCGACT TGCGCGGCTT TGTCCAGGCC AACGCGGACA GCGCCGAGGC GCAAGGCACC
TACGGGTCGT TCCTGTTCGA GCAGAGGCGC ACGGACGAGG CGGAAAAGGC ATTCCGGCAG
GCGATCACCC TTGATCCGAC GTTTTCGGGC GCGCGCATCA ACCTTGCCGA GCTCTATCGC
GCCAGCGGCG ACAACGAGAA ATCGGAACAG GCTTACGCCG AAGCAGTCGC GGCCAATCCG
GATCTGGCAG ACCTTCGCTA TGGACATGGC CTGTCGCTTG TCCGTCAAAA GGCCATGCAG
GAAGCGATCG AGGAGTTGGG AGCGGCAGTG CGTCTGGAAC CCGCCAATAC TCGATACAGG
ATGACGGCGG CCATCGCGCT CGATGCGGTC GGCCGAACGG AGGACGCTTT CGGACTGTTC
GATCCGGCCG ATTCGGGTGG TACGACAGAT GCCGATCTGC TCGGCACTGC CATTCAAATC
GGGCTCAAAC TTGGACGCTA TGCCGAGACG CTCGCTTTTG CCGAAGCGCT CGCCCAGCTT
CGGCCCCATG ACCCGCGGAC CGCAGAACTC GTCAGGCAAT TACAGGATGC AGTTCGACAG
GGCAGATAA
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| Protein sequence | MSAGSTKPPL MSATSPAEVF RRVFSGAIRY LPKLGIRVLR PHLCLRRAAL RWMALALCCV
LTLFGTAAAA EERKAPGDPL IAIHDGFADE KTCSSCHAEQ AAAFAASHHA RAMAVADEQS
VRADFNGTRF EDVGIAADFF RRDDRFFVRT EGPDGRQSDY EVKYTFAYEP LQQYLIDLGG
GRLQALDIAW DTRKQTWFWL GEGSAAKPGS TFHWTGPFYR WNRTCIDCHS TDPRANFQPQ
ANEYKSSYVA TGIGCQSCHG GGAKHVEWAK TKAGGVSADM ADPSLAKVDV NTCFACHARR
TRLVDGYRPG GAFLDHFSPA LLRSDLYFPD GQILDEVFEY GSFQQSKMAK AGVTCFDCHR
AHEGTVKAAG NALCTQCHAE TAPERFASND PSGAFDTPAH THHPEGSAGA LCANCHMPER
TYMKVDPRRD HSFVIPRPDL SAIYGTPNAC IACHVGKTNA WASESMDEWY GKGWRERPTI
AHAFAAAARD DAAAIEKLRG FLADRQQPGI VRGSAIGEMT RLDGAAAAAD VRVAAADPDP
LVRLGAAEAA ANLPPELRPD VIGGLLGDET RAVRVAAIRV LGATPSLELL GDRRRAFEAA
AGDLRGFVQA NADSAEAQGT YGSFLFEQRR TDEAEKAFRQ AITLDPTFSG ARINLAELYR
ASGDNEKSEQ AYAEAVAANP DLADLRYGHG LSLVRQKAMQ EAIEELGAAV RLEPANTRYR
MTAAIALDAV GRTEDAFGLF DPADSGGTTD ADLLGTAIQI GLKLGRYAET LAFAEALAQL
RPHDPRTAEL VRQLQDAVRQ GR
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