Gene Smed_1234 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1234 
Symbol 
ID5322081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1318778 
End bp1319581 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content60% 
IMG OID640790175 
Producthypothetical protein 
Protein accessionYP_001326919 
Protein GI150396452 
COG category[S] Function unknown 
COG ID[COG1801] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.595917 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.101491 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAGTT CGGGTAGGAT CCGTGCCGGT ATCGGCGGTT GGAATTTCGA ACCCTGGGAA 
GGCAGCTTCT ACCCGGATGG CCTTCCGAAG AAACGGCAGC TCGAATTTGC CGGCAAGGAA
CTGCGGACGA TCGAGGTCAA CGGCACCTAT TACAGTTCGC AGAAGCCGGC GACCTTTGCC
AAATGGGCGG CGGAGGTTCC GGACGGTTTC ATCTTTTCCC TGAAGGCCAG TCGCTTCGTG
ACGAACCGCA AGATTCTCTC GGAAGCAGGC GAATCGATGG AGCGGTTTTT GACGCAGGGG
CTTACCGAAC TCGGCGACCG CCTCGGGCCC ATCCTCTGGC AGTTCGCGCC GACCAAGAAG
TTCGATGCGG AGGATTTCGA GGGATTTCTG AAGCTCCTGC CGGACAAGCA GGACGGCCTG
AAGCTTCGCC ACGTGGTCGA GGTTCGCAAT CCCAGTTTCC AGGCGCCGGA GTTCGTGCAG
CTCCTCGAAA AATACAAGGT GGCCGTCGCG CTCGCAGAGC ACGCGGACTA CCCGATGATT
GCCGATGTCA CCACCGATTT CATCTATGCG CGTCTGCAGA AGGGGAGCGA CGAGGTGAAG
AGCTGCTACC CGCCGAAGGA CCTCGACCAC TGGGCCAAGC GACTGAAGGC CTTTGCCGCC
GGTGACGAGC CGGGGGATCT GGAGAAAAGC GCGCCGGCGC GCAAGCCGGA GAAGACGCCT
CGCGACGTCT TTGCCTTCTT CATCACCTCA GGCAAGATCA ATGCGCCGAA CGGAGCAAGG
GAATTGCAGA AGCGCGTGGA CTAG
 
Protein sequence
MASSGRIRAG IGGWNFEPWE GSFYPDGLPK KRQLEFAGKE LRTIEVNGTY YSSQKPATFA 
KWAAEVPDGF IFSLKASRFV TNRKILSEAG ESMERFLTQG LTELGDRLGP ILWQFAPTKK
FDAEDFEGFL KLLPDKQDGL KLRHVVEVRN PSFQAPEFVQ LLEKYKVAVA LAEHADYPMI
ADVTTDFIYA RLQKGSDEVK SCYPPKDLDH WAKRLKAFAA GDEPGDLEKS APARKPEKTP
RDVFAFFITS GKINAPNGAR ELQKRVD