Gene Smed_1220 details

Gene Information

• Locus tag: Smed_1220
• ID: 5322067
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009636
• Strand: +
• Start bp: 1303876
• End bp: 1304346
• Gene Length: 471 bp
• Protein Length: 156 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640790161
• Product: transposase IS3/IS911 family protein
• Protein accession: YP_001326905
• Protein GI: 150396438
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2963] Transposase and inactivated derivatives

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.40108
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 0.0481139
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGTTGGAG ATCGCGCTGG TGCCATGCTT GGAGTCATGC ATGAAGCCAT GGATGAAGCC 
AGGCATGATG GAGCCTACCG GCGGATCGAG CTGATCACCG GGCGACGCCA GCGGCGGAAT 
TGGACCGACG AGGAGAAGGC GCGGATCCTT GCGGAGAGCG CTGAACCCGG AGTGAACATC 
TCGGCTGTTG CCCGGCGTTG GGGCGTCAAT CGCGGCTTGC TGAATGTCTG GCGCCGCGAA 
GCCGGGCTGA CCTCTCGACG ATCAGAGCAA GCCTGCGCAC AGCAGGCGAT GTTCGTGCCG 
GTGACAGTGG TTGGAGAACG AACGCTTCAC CAGAGCGCGT CGTCGGATAT CGCTTCCGTC 
GCTTCCGGTC GAATTGAGAT CGAGATTGCC GGGGCGCGCA TGACCGTGAT CGGCTCGGTG 
GCGCCCGAGT TGGCGCAGGC GATGGTGGCG GCGTTGCGAG GACGCCGGTG A 

 

Protein sequence

MVGDRAGAML GVMHEAMDEA RHDGAYRRIE LITGRRQRRN WTDEEKARIL AESAEPGVNI 
SAVARRWGVN RGLLNVWRRE AGLTSRRSEQ ACAQQAMFVP VTVVGERTLH QSASSDIASV 
ASGRIEIEIA GARMTVIGSV APELAQAMVA ALRGRR