Gene Smed_1199 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1199 
Symbol 
ID5322046 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1280261 
End bp1280677 
Gene Length417 bp 
Protein Length138 aa 
Translation table11 
GC content59% 
IMG OID640790140 
ProductMerR family transcriptional regulator 
Protein accessionYP_001326884 
Protein GI150396417 
COG category[K] Transcription 
COG ID[COG0789] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00877844 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.661473 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTACGA TCGGAGAGCT TGCGAAAGCG ACGGGAGTGA ATGTCTCGAC CATTCGCTAT 
TATGAGCAAA TGGGCTTGCT CACGCATTCC ACCAGATCGG ACGGCAACCA GCGTCGATAT
ACGGAAGACG AGCAGGATCG CCTGGCCTTT ATCCGGCATG CCCGCGACCT GGGTCTGGCG
ATCACCGCGA TCCGGGACCT GATGGACCTA GGCCAACGGC CAGATATGTC GATGACTGAG
GCAGGGCGCA TCGCTTCCGA ACAGCTCGCC GCGATCCGCG AAAGGATTGA GCGCCTGAGG
AAGCTGGAGG TCGAACTTGT CCAGATCTCC ACGCACGGGG TGGCCTTCGG CCCGGACAAG
TCGCGTGTCA TCCAGTCTCT CGCGCGTTTC GATCTTGCTG GCACTAAGTC TGATTGA
 
Protein sequence
MLTIGELAKA TGVNVSTIRY YEQMGLLTHS TRSDGNQRRY TEDEQDRLAF IRHARDLGLA 
ITAIRDLMDL GQRPDMSMTE AGRIASEQLA AIRERIERLR KLEVELVQIS THGVAFGPDK
SRVIQSLARF DLAGTKSD