| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1178 |
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| Symbol | |
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| ID | 5322024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1255641 |
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| End bp | 1257083 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640790119 |
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| Product | tRNA (uracil-5-)-methyltransferase Gid |
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| Protein accession | YP_001326864 |
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| Protein GI | 150396397 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
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| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0290708 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC TCACATCCTC CTATTCCCCC GTCCACGTTA TTGGCGGCGG CCTTGCCGGA
TCGGAAGCCG CCTGGCAGAT CGCGGAAGCG GGCGTCCCGG TCATCCTGCA TGAGATGCGC
GGCGTGCGCG GCACGGACGC TCACAAGACC GACAGCCTTG CCGAACTCGT CTGCTCCAAT
TCTTTCCGTT CCGACGATGC GACCAGCAAT GCCGTCGGCG TTCTTCATGC GGAGATGCGC
CTCGCGGGGT CGATTATCAT GCGATGCGCC GATCTCAATC AGGTTCCTGC CGGCGGCGCG
CTGGCCGTTG ATCGCGAAGG CTTCGCCGAG GCTGTCAGCG CGGCGATCGC GGCCCATCCG
CTGATCACCG TCCTGCGGGA GGAAATCCGC GGCCTGCCGC CGAAGGAATG GGATCTCGCC
ATCATTGCGA CCGGTCCGCT TACGGCACCG GATCTCGCCG ACGCGATCCG GGCGGAAACC
GGCGCTGACG CCCTCGCCTT TTTCGACGCC ATCGCGCCGA TCGTCCATGC GGATACGATA
GACATGGATA TCTGCTGGCA TCAGTCGCGC TACGACAAGG TAGGCCCCGG CGGCACGGGC
AAGGATTACA TCAACTGTCC GCTGACGCAG GAGGAATACA ACGCCTTCAT CGATGCGCTC
ATCGCCGGCG ACAAGACCGG CTTCAAGGAA TGGGAAGGCA CACCCTATTT CGACGGGTGC
CTTCCAATCG AAGTGATGGC AGAACGCGGA CGTGAGACCC TGCGTCACGG GCCAATGAAG
CCGATGGGGC TTACCAACGC CCATAATCCG TCGGTCAAGC CCTATGCGGT CGTACAGCTT
CGGCAGGACA ATGCGCTCGG CACGCTCTAC AACATGGTCG GCTTTCAAAC GAAACTGAAA
TATGGCGCGC AAGGAGAGGT CTTCCGGATG ATCCCGGGGC TCGAGAAGGC AGAGTTTGCA
AGACTCGGCG GTCTGCACCG CAATACCTAT ATCAATTCGC CGACCCTGCT CGACCAGTCG
CTGACCCTCA AATCGCGTGC GGGACTGCGC TTCGCCGGCC AGATCACCGG CTGCGAGGGC
TATGTAGAAA GCGCGAGTAT CGGACTTCTG GCCGGCCGCT TCGCCGCGGC GGAACGCAAG
GGCGCCTCTC CCGCCATTCC GCCAGTGACG ACCGCCTTCG GCGCTCTCCT CAATCACATC
ACCGGAGGGC ACATCGTCTC CGACGATGAA CCGGGCAAGC GCTCCTTCCA GCCGATGAAT
GTCAATTTCG GGCTGTTTCC GCCGCTCGAT CCCGGGGCCC TCACAAGGCC GGAGGGGGCG
AAGCGCTTTC GCGGCAAGGA AAAGGCAAGC GCCAAGAAGC AGGCGATGGC CTCACGAGCG
CTGAGCGACT GTGCAACCTG GCTCGACAAA AATCTATTGA TCGGCGGGGC AGCGACCCGT
TGA
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| Protein sequence | MNKLTSSYSP VHVIGGGLAG SEAAWQIAEA GVPVILHEMR GVRGTDAHKT DSLAELVCSN
SFRSDDATSN AVGVLHAEMR LAGSIIMRCA DLNQVPAGGA LAVDREGFAE AVSAAIAAHP
LITVLREEIR GLPPKEWDLA IIATGPLTAP DLADAIRAET GADALAFFDA IAPIVHADTI
DMDICWHQSR YDKVGPGGTG KDYINCPLTQ EEYNAFIDAL IAGDKTGFKE WEGTPYFDGC
LPIEVMAERG RETLRHGPMK PMGLTNAHNP SVKPYAVVQL RQDNALGTLY NMVGFQTKLK
YGAQGEVFRM IPGLEKAEFA RLGGLHRNTY INSPTLLDQS LTLKSRAGLR FAGQITGCEG
YVESASIGLL AGRFAAAERK GASPAIPPVT TAFGALLNHI TGGHIVSDDE PGKRSFQPMN
VNFGLFPPLD PGALTRPEGA KRFRGKEKAS AKKQAMASRA LSDCATWLDK NLLIGGAATR
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