| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1174 |
|---|
| Symbol | |
|---|
| ID | 5322020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1251265 |
|---|
| End bp | 1253841 |
|---|
| Gene Length | 2577 bp |
|---|
| Protein Length | 858 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640790115 |
|---|
| Product | bifunctional preprotein translocase subunit SecD/SecF |
|---|
| Protein accession | YP_001326860 |
|---|
| Protein GI | 150396393 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF
[COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.149804 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.102864 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGGT TTTCGCCGTT CAAGAACATT CTGATTTGGC TGGTCGTCCT GGCGGGCTTT
GCCTGTGCGC TGCCAAATCT TCTTTCCAGG GAGCAGCTTG CCGATTGGCC GACATGGCTG
CCGCACCGGC AGGTACCGCT CGGCCTCGAT CTCAGTGGCG GCTCTCATAT TGTCCTGCAG
GTCAACCGCG AAGACATCGT TGCGGAGCGC CTGCATTCAA CGATCGATGC CATCGCCGAT
GCGTTGAGGC AGGCGGATAT CCACTATACG GGTCTGTCAG GTAGCGGGCG GAGCCTGCAG
TTTCGTCTCC GCGACGGAAC GAAGGCGCCT GCCGCGCGTG AGGCGTTGAA GGCTTTGTCC
GCTCCCGTTC AGCAGGACGG CCTCTTTGGG AAGTCCATCC AGGAATTGGT CTACGAAGAA
AGCGCGACCA ACGACACGCT TCGGCTTCGC CTGACCGACG AAGGCATCGA CTTCAGGGTC
TCCGCCGCGG TTGCCCGTTC CGTCGAGGTC GTGCGCCGGC GCGTCGGCGA GGTCATCGCA
GTTGCACCAT CGATAGAGCG TCGGGAAAAT GACCGCCTCA GCGTGCAGGT GCCCGGTTTG
GACGAGCCGC AAAGGCTCAA AGATCTTCTT GCCCAGCGGG GCGACGTCGC TCTGAGGTGG
CTGGACCTGT CGATGCCGGC ACAGCAGGCC GTCGACACCA GGCCGCCGGC AGCTTCCGAG
GTCCTCTATT CGCTCGACGA TCCACCCATC CCCTACCTCG TGGAGCGACG AGCCTTCGCT
GCAGCACCGG ACTTCGTCGA GGCACAGCCG GGCTTCGACC CCGCAACGGC CGAACCTGTC
GTAGATGTAA GGATCGCGGC GGGCGCAACC GAGCGGATTG CTCCGATCCT GCAGTCGGAT
CCAAGGAAGC AGTTTGCGAT CGTACTCGAC GGGCAGGTCA TCTCGACCTC CGTTCTGGAC
AGCGCCGTCT CTGGTGATGC CGTCCGGATT TCCGGAAATC TCTCGGAAGA TGGTGCCAAC
GATCTCGCCG CTTTGATCCG TGCCGGTCCG CTTCCCGTTT CGCTGACCGT CATCGAGGAA
CGTACTGTCG GCCCGGAGGA CGGGGCCGAC GCAGTTGCAA ACGGCCTCAC GGCCGGCCTG
ATCGCCGCCC TTGCGGTCGC GGCCTGTATG ATCGGCTTTT ACGGCTTCTT CGGCCTCGTC
GCAGTCGTCG CCGTCATCGT CAACGTCGTA CTGATAATCG CGGTATTGTC CGTCACCGGC
GCCACGCTGA CCTTGCCCGG AATTGCCGGG ATTATCCTCA CGATCGGAAT TGCGGTCGAC
TCGAACGTTC TCATCTACGA GCGTCTCAGG GAAGAGGCAC GCAGCAGTGA CAAGCCGTTG
CGACGGGCGC TGGACGATGG CTTCGAACGC GTCTTGAGAA GCATCGTCGA CTCGAACCTT
ACGATATTCA TCGCGGGCGT TATCCTGCTC TCTCTCGGCT CCGGCGCCTT CAGCGGGTTT
GCGGTCACGC TTGCCGTCGG CAGCCTTACC ACCATTCTAA CCGCGCACAG CCTGACGCGC
CGGCTTATCC GCGGCTGGTA TCGCCGTCGT CGGCCGCACC GGCTGCCACG GGGCATTCGG
ACGGGATTTT TCAGTCGGGC AGACTTCCGT TTCATGGCGA TCCGTAATCC GGTTTTCATT
TTGATGACAG CTTTGTCGCT TGCTTCGCTG GTCCTCCTGA CAAGCCTCGG GCTCAACATG
GGAGCAGATT TCAGAGGTGG CTCCGTTATC GAGCTGCGGG CGCGAACCGG GGTGGCTGAC
CGTGCCGACA TCCGTGCCCG CCTCGACGAA CTGAACCTCG GAGAGGTTCA AATCGAGGAA
CTTGGTTCGG CGCGAGACGT TCTCATCCGT ATCCCCTCGC AGGAAGCGGG CGACAATGCC
GAGCAGACGG CAGTTGGTCT CGTTCGCGCA GAGCTCGAGG ATCAGTATGA CTTCCGGCGT
GTCGCGGTGG TCGGTCCCGG CGTTTCCGGG GAGCTGACGC GGGCAGGATC GCTTGCTCTT
GCTGCTGCGG TGCTGAGCGT TCTGCTTTAT GTCTGGCTTC GTTTCGGCCG GCGATTTGCG
TTAGGAGCCG TTGTCGCGAC CTTGCACGAT GTGCTGCTGA CCCTCGGATT CCTTGGGCTG
ACAGGCATTG AATTCAATCT CGCCAGCATT GCGGCGCTGC TGACGATCGT GTGCTATTCG
CTGAGCGATA CCATGGTGAT TTATGATCGA GTTCGGGAAA ATCTGGTGCG CTATCGAAGG
ATGCCGCTTT CAGTCCTGAT CGACACGTCG ATCAATCAGA CCCTCTCGCG AACCGTTCTG
ACGTCCTTGA CGACGATGCT TGCTCTCGTC GCGCTCTATC TGTTCGGGGG CAGCGTTCTT
GTTCAGACCT TCAGTGCGAC GCTCATATTC GGCGTACTTG TGGGCACAGT CTCTTCGATC
TATGTCGCCG GACCGCTGCT CATTCTCTTC AACCGCCGAA ACAGTCGGCT TGGTGGCACG
GAGGACCCGA ACAATCCGGA TTCGCCGTCG AAGACAGAAG CAAAGGGTGC CGTCTGA
|
|---|
| Protein sequence | MPRFSPFKNI LIWLVVLAGF ACALPNLLSR EQLADWPTWL PHRQVPLGLD LSGGSHIVLQ
VNREDIVAER LHSTIDAIAD ALRQADIHYT GLSGSGRSLQ FRLRDGTKAP AAREALKALS
APVQQDGLFG KSIQELVYEE SATNDTLRLR LTDEGIDFRV SAAVARSVEV VRRRVGEVIA
VAPSIERREN DRLSVQVPGL DEPQRLKDLL AQRGDVALRW LDLSMPAQQA VDTRPPAASE
VLYSLDDPPI PYLVERRAFA AAPDFVEAQP GFDPATAEPV VDVRIAAGAT ERIAPILQSD
PRKQFAIVLD GQVISTSVLD SAVSGDAVRI SGNLSEDGAN DLAALIRAGP LPVSLTVIEE
RTVGPEDGAD AVANGLTAGL IAALAVAACM IGFYGFFGLV AVVAVIVNVV LIIAVLSVTG
ATLTLPGIAG IILTIGIAVD SNVLIYERLR EEARSSDKPL RRALDDGFER VLRSIVDSNL
TIFIAGVILL SLGSGAFSGF AVTLAVGSLT TILTAHSLTR RLIRGWYRRR RPHRLPRGIR
TGFFSRADFR FMAIRNPVFI LMTALSLASL VLLTSLGLNM GADFRGGSVI ELRARTGVAD
RADIRARLDE LNLGEVQIEE LGSARDVLIR IPSQEAGDNA EQTAVGLVRA ELEDQYDFRR
VAVVGPGVSG ELTRAGSLAL AAAVLSVLLY VWLRFGRRFA LGAVVATLHD VLLTLGFLGL
TGIEFNLASI AALLTIVCYS LSDTMVIYDR VRENLVRYRR MPLSVLIDTS INQTLSRTVL
TSLTTMLALV ALYLFGGSVL VQTFSATLIF GVLVGTVSSI YVAGPLLILF NRRNSRLGGT
EDPNNPDSPS KTEAKGAV
|
|---|
| |