| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1138 |
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| Symbol | |
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| ID | 5321984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1206223 |
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| End bp | 1208556 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640790079 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_001326824 |
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| Protein GI | 150396357 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.309007 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCTG GTTCAAGGTT TTTGAACGCG GTGTCGGCGT TTGCGCTGTC AGCAAGCATG
GTCGCCACGG GTACCGGGGT TGGGCTTGTT GCCAGCACCT CAGTCGCGCA GGCCGCGGTC
ATCAATCGTG TTGAGGTGCG CGGTGCGACG CGGGTCAGCG CGGAAACCGT TCGCGCGAAC
ATCACCATCG TACCCGGCAA GAGCTTCAGC AATGCCGACA TCGACGCATC CGTGAAGCGC
CTCTATGCGA CCGGCTATTT CTCCGATGTC AGCATTACGG TTTCCGGAGG ATCGCTTGTC
GTCTCCGTCA GTGAGAACCA GCTCGTCAAT CAGGTCGTCT TCAACGGCAA CCGCAAGATC
AAGGACGATA AGCTCCAGGG TATCGTCCGG ACCCAGCCGC TCGGCCCCTA TAGCGAAGCT
ACCGTCGAAA CCGACATTCA GGCTATCCGG GACGCTTATT CGGCCATCGG CCGCAGCGAT
GTAACGGTGA CGACCCAGGT CGTTCCGATT GCCGAAGGGC GCGTCAATCT TGCCTTCGTC
ATCAACGAAG GCGAGCGCAC GAAGATCACC CAGATCAATT TCGTAGGTAA CGAGGCCTAT
AGCGACGGCC GCCTGCAGTC GGTAATCGCG ACCAAGGAAT CGGGCATCTT CTCGTTCCTT
ACGCGCAAGG ACGTCTACAA TCCGGACAAG CTGCGGGCCG ACGAGGAATT GCTGCGCCAG
TTCTACTACA ATCGCGGCTT CGCGGATTTC CAGGTCGTCT CGTCCGAGGC TGCGCTCAAC
GAGGCAACCA ACGAATACAC GGTCACGATT ACGGTCGAGG AAGGTCCTCG CTATGACTTC
GGTCCGGTCA ATATCGAATC GACTGTTGAA GGCGTCGATG CCGAAGAGTT GAGGGGACTT
GTTCAGAGCC ACGAAGGCTC GGTGTATAAG GCCAAGGACA TTCAGAGCAC GATGAGCGAG
ATTTCGAAGC GCGTCGCGTC GGAGGGCTAT CCCTTTGCCC GCGTCACGCC GCGCGGCAAC
CGCGATCTCG CCAATCACAC GATTGCCGTC GATTATCTCG TGGATCAGGG CGAGCGGGCC
TATGTCGAGC GCATCGAGAT ACGCGGCAAC ACGCGCACGC GTGATTACGT CATCCGGCGC
GAATTCGATG TCGGCGAGGG CGACGCCTTC AACCAGGAAA TGGTCGCGCG CGCCAAGCGT
CGCCTGGAAG CGCTCGGCTA TTTCTCGTCG GTGAACATTT CGACGACGCC CGGCAGTGCA
GCTGACCGTG TCATCATCGT CGTCGATGTG CAGGATCAGT CGACCGGTTC GTTCGGCATC
GGCGCCGGCT ATTCCGCCGG CGACGGCGGC GGCTTCCTCG TTGAGGCTTC GATCGAGGAG
AAGAACTTCC TTGGTCGCGG CCAGTATATC CGACTTGCCG CCGGTAAGGG CGAAGACAGC
CAGACCTACA ATGTTTCGTT CACCGAGCCC TATTTCCTCG GCTATCGCCT CGCGGCGGGC
TTCGATCTCT TCAAGAACGA AAACGACTTC GACGACGACA ATTACAGCTA CAATGATCAG
GGCTTCAGCC TGCGCGTGAC GGCGCCGATC ACTGAAAACC TTTCGACAAC GCTGCGTTAC
AACTATACGG AGCTGGAATA TTTCGGCGAC ACGGACGAAC TCTCGTCGCC TTATGACCGT
GTCGTGGACG GTGGCACCTG GACACGTTCG TCCATCTCGC AGTCGATCAC CTACAACACG
CTGGACGATG CGCAGCTGCC GCATGAGGGC ATTCTCGCCT CGGTGACGCA GGAATTTGCC
GGCCTCGGCG GCACGTCGGA CTTCTACAAG CTGACCGGTA AGGCCAAATG GTACTACACG
CTGCACGACG AGGCCGACAT TATCGGATCG CTCGCCGGTA GCGCCGGCCA CCTGTTCAAA
ACATCCGGTA CGCTGGAGGT TTTCGATCAG TTCCAGCTGG GCAGCAACGA TATTCGCGGC
TTCGAGCGCA ACGGCGTAGG CCCGCGTGTC AACAATGGCG ACGCTTTGGG CGGCACGACC
TATTTCACGG CATCTGCGGA AGCGACGTTC CCGCTGCCGG GTCTTCCGCG TGACAGCGGC
TTCCGCGGCG CGCTCTTTGT CGACGCAGGC ACCCTCTATG ACAACGATCT GGAGCTGACC
GGTCCGGGTG AATCAGTCCG CGGGAACGAC GCCTCGCTGC GTGCCTCCGT GGGTGTCAGC
TTGATCTGGG CTTCGCCCTT CGGTCCGTTG CGTGTCGACT ACGCGGTGCC GGTTGCAAAG
GAAGACTTCG ACGAAATTCA GAACTTCAAG TTCGGAATCA ACTCGTCGTT CTGA
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| Protein sequence | MKAGSRFLNA VSAFALSASM VATGTGVGLV ASTSVAQAAV INRVEVRGAT RVSAETVRAN
ITIVPGKSFS NADIDASVKR LYATGYFSDV SITVSGGSLV VSVSENQLVN QVVFNGNRKI
KDDKLQGIVR TQPLGPYSEA TVETDIQAIR DAYSAIGRSD VTVTTQVVPI AEGRVNLAFV
INEGERTKIT QINFVGNEAY SDGRLQSVIA TKESGIFSFL TRKDVYNPDK LRADEELLRQ
FYYNRGFADF QVVSSEAALN EATNEYTVTI TVEEGPRYDF GPVNIESTVE GVDAEELRGL
VQSHEGSVYK AKDIQSTMSE ISKRVASEGY PFARVTPRGN RDLANHTIAV DYLVDQGERA
YVERIEIRGN TRTRDYVIRR EFDVGEGDAF NQEMVARAKR RLEALGYFSS VNISTTPGSA
ADRVIIVVDV QDQSTGSFGI GAGYSAGDGG GFLVEASIEE KNFLGRGQYI RLAAGKGEDS
QTYNVSFTEP YFLGYRLAAG FDLFKNENDF DDDNYSYNDQ GFSLRVTAPI TENLSTTLRY
NYTELEYFGD TDELSSPYDR VVDGGTWTRS SISQSITYNT LDDAQLPHEG ILASVTQEFA
GLGGTSDFYK LTGKAKWYYT LHDEADIIGS LAGSAGHLFK TSGTLEVFDQ FQLGSNDIRG
FERNGVGPRV NNGDALGGTT YFTASAEATF PLPGLPRDSG FRGALFVDAG TLYDNDLELT
GPGESVRGND ASLRASVGVS LIWASPFGPL RVDYAVPVAK EDFDEIQNFK FGINSSF
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