Gene Smed_1135 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1135 
Symbol 
ID5321981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1203128 
End bp1203886 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content62% 
IMG OID640790076 
Productundecaprenyl pyrophosphate synthase 
Protein accessionYP_001326821 
Protein GI150396354 
COG category[I] Lipid transport and metabolism 
COG ID[COG0020] Undecaprenyl pyrophosphate synthase 
TIGRFAM ID[TIGR00055] undecaprenyl diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCCGGAC AGCCCATGCA AGAATTCAAT CCCGCAAACG TGCCGGCGCA CGTCGCCATC 
ATCATGGACG GCAACGGTCG CTGGGCGAAT GCGCGCGGAC TGCCGCGCAC CATGGGGCAC
CGCAAGGGCG TCGAGGCGGT CCGTGGCGCG GTGAAGACGG CTGCTGAGTT AGGCATCCGA
TATCTGACGC TGTTCGCTTT CTCGTCGGAG AACTGGAACA GGCCCGAAAA CGAAGTCAGC
GATCTCATGG GCCTGCTCAA GGCTTTCATC CGCCGGGACC TCGCCGATCT CCACCGTGAG
AATGTCCGCA TACGGGTCAT CGGAGACCGC TCGAATCTGA GCGGAGATAT CCTGCCGCTG
CTCATCGAAG CGGAGGAGAC GACGATCGCC AATAGCGGCA TCACGGTCAT CATTGCATTC
AATTACGGCG CCAGGGACGA GCTGGCGAGG GCCATGCGCC ATCTGGCGGA ACACGTCGCC
GCCGGTCGTC TCCGGCCGGA TGAGATCACC CCCGAAAGAA TCTCGGCAAC GATCGACACG
GCGGGGGTTC CGGATCCCGA TCTCATAATC CGGACGAGCG GCGAGGAGCG CCTCTCCAAC
TTTCTCCTGT GGCAGGGCGC CTACTCCGAA TTGCTGTTCA TTCCGGAACT CTGGCCGGAT
TTCACGCGCG AGACGTTTCT CGCGGCGATC GAACAATATG CCTGCCGAGA GCGCCGTTTC
GGTGGTTTGG CGCAACCGAC TCTGGCGGTC GGCTCCTGA
 
Protein sequence
MSGQPMQEFN PANVPAHVAI IMDGNGRWAN ARGLPRTMGH RKGVEAVRGA VKTAAELGIR 
YLTLFAFSSE NWNRPENEVS DLMGLLKAFI RRDLADLHRE NVRIRVIGDR SNLSGDILPL
LIEAEETTIA NSGITVIIAF NYGARDELAR AMRHLAEHVA AGRLRPDEIT PERISATIDT
AGVPDPDLII RTSGEERLSN FLLWQGAYSE LLFIPELWPD FTRETFLAAI EQYACRERRF
GGLAQPTLAV GS