| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1117 |
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| Symbol | |
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| ID | 5321963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1185891 |
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| End bp | 1188407 |
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| Gene Length | 2517 bp |
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| Protein Length | 838 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640790058 |
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| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
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| Protein accession | YP_001326803 |
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| Protein GI | 150396336 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.328847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.667342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCAACAT TTTCGCCCAG CCTCGAAAAG GCGCTGCATC AGGCACTGAC TTTTGCCAAC
GAGCGCCATC ATGAATATGC GACGCTCGAG CACCTGCTGC TGGCATTGAT CGACGATGCC
GATGCGGCGG CTGTGATGGG CGCGTGCAAT GTCAATCTGG ATACGCTTCG TAAGACCGTG
ACCGATTATG TCGACAATGA ATTGTCGAAC CTGGTCACCG GTTATGATGA AGATTCCAAG
CCGACGGCCG GTTTTCAGCG CGTAATCCAG CGCGCCGTCA TCCATGTGCA GTCGTCCGGC
CGCGAGGAGG TGACGGGCGC CAACGTGCTC GTGGCGATCT TCGCCGAGCG CGAGAGTCAT
GCTGCCTATT TCCTGCAGGA GCAGGAAATG ACGCGTTACG ACGCCGTCAA TTTCATTTCG
CACGGTATCG GCAAGCGGCC GGGCAGTTCC GAGGCGCGGC CGGTGCGCGG GGCTGAAGAC
CAGGACTCCG AGCAGAAGGC ATCGCGCGAG AGCGAGGAAA CCGGTCCGAA GAAACAGCAG
GATGCGCTCA CCGCCTATTG CGTGAACCTC AACGAAAAGG CGAAGTCCGG CAAGATCGAT
CCGTTGATCG GGCGTCATGC GGAGGTCAAC CGGACGATTC AGGTCCTTTG CCGCAGGTCC
AAGAACAACC CGCTCTATGT GGGCGATCCG GGCGTGGGCA AGACGGCGAT CGCCGAAGGT
CTCGCCAAGC GCATCATAGA AAAGAAAGTG CCAGAGGCGC TGCAGGACGC CACGATTTTC
GCGCTCGACA TGGGGACGCT GCTCGCCGGC ACGCGCTACC GCGGCGACTT CGAGGAACGG
TTGAAGCAGG TAGTCAAGGA GCTCGAAGAC TATCCCGGCG CGGTGCTTTT CATCGATGAG
ATCCATACGG TTATCGGAGC CGGCGCCACA TCCGGCGGCG CCATGGATGC GTCGAACCTC
CTGAAGCCCG CGCTTTCTTC CGGCGCGATC CGCTGCATCG GCTCGACGAC CTACAAGGAG
TACCGCCAGT TCTTCGAAAA AGACCGGGCG CTTGTTCGCC GTTTCCAGAA GATCGACGTT
AACGAGCCGA CAATTGCAGA CGCAATCGAG ATCATGAAGG GTTTGAAGCC CTATTTCGAG
GACTACCACC GGCTGAAATA CACCAACGAT GCCATAAAGG CGGCGGTGGA GCTTTCCGCA
CGCTACATCA ACGACCGGAA ACTCCCGGAT AAGGCGATCG ATGTCATCGA CGAGTCCGGT
GCCGCGCAGA TGCTTCTGCC CGTCAGCAAG CGCCGCAAGC TGATCACGGA GAGGGAGATC
GAGGCGACGA TCGCGACAAT GGCGCGCATC CCGCCCAAGA CGGTCTCCAA GGACGACGAG
GCGGTGCTCG CCAATCTGGA GCAAGAACTG CGGTCCGTCG TATATGGCCA GGATCTGGCG
ATCGAGGCGC TGGCCTCGTC GATCAAGCTG GCACGGGCGG GTCTCAGAGA GCCGAACAAG
CCTATCGGCT GCTACGTCTT CTCCGGCCCG ACAGGTGTCG GCAAGACGGA AGTGGCAAAG
CAACTCGCCA CCTCGCTCGG CGTCGAGCTG CTGCGCTTCG ACATGTCGGA GTACATGGAA
CGCCACACGG TTTCCCGACT GATCGGCGCA CCTCCGGGCT ATGTCGGCTT CGATCAGGGC
GGGCTCCTGA CCGATGGCGT CGACCAGCAT CCGCACTGCG TGCTGCTTCT GGACGAGATC
GAAAAGGCGC ATCCGGACTT ATTCAACATC CTCCTGCAGG TGATGGACCA CGGTTCATTG
ACCGACCACA ACGGCAAGAA GATCGATTTC CGGAACGTCA TCCTTATCAT GACGACCAAT
GCGGGCGCGT CCGATATGGC TCGGGCGGCA ATCGGCTTCG GTTCTTCCAA GCGGACCGGC
GAGGACGTGG AGGCACTGAA TCGTCTCTTC ACGCCGGAAT TCCGCAACCG CCTGGACGCG
GTCATTCCGT TCAATTCCCT GCCGACTCCG GTCATCCACA AGGTGGTTCA GAAGTTCGTC
ATGCAGCTCG AGACGCAGCT TGCCGAGCGC AACGTCACCT TCGATCTCGC GCCCGATGCG
ATCGCCTGGC TTGCCGAGAG GGGTTATGAT GAGAAGATGG GTGCGCGGCC GCTGTCGCGC
GTCATCCAGG AAAACATCAA GAAGCCTCTC GCGGACGAAA TTCTGTTCGG CAAGCTCAAG
AAGGGCGGCG TCGTCAAAGT GACGATCGGT ACGAAGGAAG ACGGTGCGAA AGGGCTCATG
CTCGAAGCTG TGCCGGAAAC CGCTCCGATC AAGCCCAAAG CCGAGGTCTC GCGGCCGGCC
GGCAAGGGCG CGAAACCCAA GAAGGCAAGC GAAAAGGAGA GCGTGGCCGC GGCCGGAGAG
GGTGCCAAAG CCAAGTCGAA GAAGACGACG GCCAAATCCG CGAACAAGAG CGGTGGCGGT
TCCGATACCG CTCCTCTCAG GGGACGTACG GTTCCGAAGG TGCCGCGAAA GAAATAG
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| Protein sequence | MPTFSPSLEK ALHQALTFAN ERHHEYATLE HLLLALIDDA DAAAVMGACN VNLDTLRKTV
TDYVDNELSN LVTGYDEDSK PTAGFQRVIQ RAVIHVQSSG REEVTGANVL VAIFAERESH
AAYFLQEQEM TRYDAVNFIS HGIGKRPGSS EARPVRGAED QDSEQKASRE SEETGPKKQQ
DALTAYCVNL NEKAKSGKID PLIGRHAEVN RTIQVLCRRS KNNPLYVGDP GVGKTAIAEG
LAKRIIEKKV PEALQDATIF ALDMGTLLAG TRYRGDFEER LKQVVKELED YPGAVLFIDE
IHTVIGAGAT SGGAMDASNL LKPALSSGAI RCIGSTTYKE YRQFFEKDRA LVRRFQKIDV
NEPTIADAIE IMKGLKPYFE DYHRLKYTND AIKAAVELSA RYINDRKLPD KAIDVIDESG
AAQMLLPVSK RRKLITEREI EATIATMARI PPKTVSKDDE AVLANLEQEL RSVVYGQDLA
IEALASSIKL ARAGLREPNK PIGCYVFSGP TGVGKTEVAK QLATSLGVEL LRFDMSEYME
RHTVSRLIGA PPGYVGFDQG GLLTDGVDQH PHCVLLLDEI EKAHPDLFNI LLQVMDHGSL
TDHNGKKIDF RNVILIMTTN AGASDMARAA IGFGSSKRTG EDVEALNRLF TPEFRNRLDA
VIPFNSLPTP VIHKVVQKFV MQLETQLAER NVTFDLAPDA IAWLAERGYD EKMGARPLSR
VIQENIKKPL ADEILFGKLK KGGVVKVTIG TKEDGAKGLM LEAVPETAPI KPKAEVSRPA
GKGAKPKKAS EKESVAAAGE GAKAKSKKTT AKSANKSGGG SDTAPLRGRT VPKVPRKK
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