| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1109 |
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| Symbol | |
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| ID | 5321955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1179427 |
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| End bp | 1180836 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640790050 |
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| Product | cystathionine beta-lyase |
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| Protein accession | YP_001326795 |
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| Protein GI | 150396328 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.116857 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.364379 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGGGT CAAGAGAGGT CTCCGAATTT ACGAATTTCG ATGTGAAAAA CGTGAAACTC
GCCAGAAGTT TAGGCGGTTT GGCGCTGGAA TTGCCGGTCA TGAACAAAAA ACCGCCAGTT
GGCCTCCTTC CGGACCACGA GGCTCGCCAC TTGAATTTTT CCTTGACCCG GCCGGTATCC
CGTCCGATGA GTCGGCAGCG GAATTCAACA GCGGATGTTT CAATGGCAGA CAAGACGAAC
GCGCGAGCGG AGCAGGGCAT CAATACCCGT CTCGCACACA CCGGCAATAA CCCTTCCGAC
TATCACGGCT TCGTCAATCC ACCGGTGGTA CACGCTTCCA CCGTGCTCTT CCCGAATGCG
AGGACGATGG AGACGCGGTC TCAGAAATAT ACCTATGGCA CGCGCGGCAC GCCGACCACC
GACGCGCTTT GTGAGGCGAT CAACGAACTG GAGGGCGCGG CCGGGACGAT CCTCGTTCCC
TCGGGCCTCG CAGCGGTCAC TGTGCCTTTC CTCGCCTATC TCTCCTCGGG CGACCATGTC
CTTATCGTCG ATTCGGTCTA TTTTCCCACC CGCCACTTCT GCGACACTAT GCTCACAAGG
CTCGGCGTTA CCGTTGAATA TTATGACCCG TCCATCGGGG CGGGCATAGA GAATCTGATC
AGGCCGAACA CGCGGCTGGT GCATACCGAA GCGCCGGGCT CGAATACGTT CGAGATGCAG
GATATACCGG CGATTGCCGC CGCCGCGCAC CGGCATGGCT GCATCGTGAC CATGGACAAC
ACCTGGGCGA CGCCCGTCTA TTTCCGGCCG CTCGATTACG GCGTCGACGT TTCGATCCAC
GCGGCGACCA AATATCCCTC GGGTCACTCG GACGTTCTGC TTGGAACCGT ATCGGCCAAC
GCGGCCCATT GGCCGGCACT GAGCGAGGCG ATGGTGACAC TGGGTGTCTG CGTTTCGCCG
GACGACAGCT ATCAGATCCT GCGCGGCCTG CGCACAATGG GCGTCCGCCT GGAGCGACAC
CAGGCAAGCG CGCTTGCGAT TGCCGAATGG CTCGAGGGCC GCGAGGAGGT GGCGCGGGTG
CTTCATCCGG CACTGCCGAG CTTTCCGGGC CATGAGTTGT GGAAGCGCGA TTTCGGCGGC
GCAAGCGGAA TATTCTCCTT CGTGCTCAAG GCCGATCCCG AAAACGGCAA GGCAAAGGCG
CATGCCTTCC TGGACGCGCT CTCGATCTTC GGACTCGGCT ACTCCTGGGG CGGATTCGAG
AGCCTCGCCG TTCACGTGAA CCTCTCCGAT CGCAAGGTCG CCAAGGCGCC TCAGGAGGGG
CCGGTCATCC GGCTGCAGAT CGGGCTCGAA GACGTGCCGG ACATCCGCCG GGATGTTGAA
GCCGGTCTCG CTGCCGCAAA TGCGCTCTGA
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| Protein sequence | MEGSREVSEF TNFDVKNVKL ARSLGGLALE LPVMNKKPPV GLLPDHEARH LNFSLTRPVS
RPMSRQRNST ADVSMADKTN ARAEQGINTR LAHTGNNPSD YHGFVNPPVV HASTVLFPNA
RTMETRSQKY TYGTRGTPTT DALCEAINEL EGAAGTILVP SGLAAVTVPF LAYLSSGDHV
LIVDSVYFPT RHFCDTMLTR LGVTVEYYDP SIGAGIENLI RPNTRLVHTE APGSNTFEMQ
DIPAIAAAAH RHGCIVTMDN TWATPVYFRP LDYGVDVSIH AATKYPSGHS DVLLGTVSAN
AAHWPALSEA MVTLGVCVSP DDSYQILRGL RTMGVRLERH QASALAIAEW LEGREEVARV
LHPALPSFPG HELWKRDFGG ASGIFSFVLK ADPENGKAKA HAFLDALSIF GLGYSWGGFE
SLAVHVNLSD RKVAKAPQEG PVIRLQIGLE DVPDIRRDVE AGLAAANAL
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