| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1108 |
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| Symbol | |
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| ID | 5321954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1178288 |
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| End bp | 1179313 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640790049 |
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| Product | cationic amino acid ABC transporter, periplasmic binding protein |
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| Protein accession | YP_001326794 |
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| Protein GI | 150396327 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.417319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAGAA CAATTCTGAC AGCTCTCGTA AGCGCCGCTG TCATGGGGGT AGGCTCATAT
GCGGCATCGG CCGCGACACT TGACGACGTG AAGGCAAAGG GATTCGTCCA ATGCGGCGTG
AATACGGGTC TCGCCGGTTT CGCGGCCCCT AACGCTTCGG GCGATTGGAG CGGTTTCGAC
GTCGACTACT GCAAGGCGAT TGCCGCTGCT GTCTTCGGCG ACGCAACCAA GGTGAAGTAC
ACGCCGCTGT CGGCGAAGGA ACGCTTTCCG GCTCTCCAGT CCGGCGAAGT CGACGTGCTC
GCACGCAATA CGACCTGGTC GATCAACCGT GACACGGCTC TCGGCTTCAA TTTCCGTCCG
GTCAACTATT ATGACGGTCA AGGCTTCATG GTTCGCAAGG AACTCGATGT GAAGTCTGCC
CTCGAACTTT CGGGCGCTGC CGTCTGCGTA CAGACAGGCA CCACGACCGA ACTCAACCTC
GCCGACTACT TCAAGGCGAA CAATCTGCAG TACAATCCGG TCGTCTTCGA AAAGCTGGAA
GAAGTGAATG CTGCCTACGA CGCCGGCCGC TGCGACGTCT ATACAACCGA CCAGTCCGGC
CTTTATTCGC TGCGCCTCAC GCTCTCTAAG CCCGACGATC ACATCGTGCT GCCGGAGATT
ATCTCGAAAG AGCCTCTCGC ACCTGCAGTC CGACAAGGCG ACGATCAGTG GTTCGACATC
GTCAGTTGGG TCCATTACGC CCTGGTCCAG GCCGAAGAAT TCGGCGTCAC CCAGGCCAAT
GTCGAAGAAA TGAAGAAGTC GGCGAACCCT GATGTTCAGC GCTTTCTGGG CGTCGAAGCC
GACAGCAAGA TCGGCACCGA CCTCGGCCTG ACCAACGAAT GGGCCGTCAA CATCGTCAAG
GCGGTCGGCA ATTACGGCGA AGTGTTCGAT CGCAACATCG GCGCCGGCAG CCCGCTGAAG
ATCGAGCGAG GCCTCAACGC CCTCTGGAAC AAGGGCGGTC TGCAATACGC CCCGCCGGTC
CGCTAA
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| Protein sequence | MARTILTALV SAAVMGVGSY AASAATLDDV KAKGFVQCGV NTGLAGFAAP NASGDWSGFD
VDYCKAIAAA VFGDATKVKY TPLSAKERFP ALQSGEVDVL ARNTTWSINR DTALGFNFRP
VNYYDGQGFM VRKELDVKSA LELSGAAVCV QTGTTTELNL ADYFKANNLQ YNPVVFEKLE
EVNAAYDAGR CDVYTTDQSG LYSLRLTLSK PDDHIVLPEI ISKEPLAPAV RQGDDQWFDI
VSWVHYALVQ AEEFGVTQAN VEEMKKSANP DVQRFLGVEA DSKIGTDLGL TNEWAVNIVK
AVGNYGEVFD RNIGAGSPLK IERGLNALWN KGGLQYAPPV R
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