| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1107 |
|---|
| Symbol | |
|---|
| ID | 5321953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1176995 |
|---|
| End bp | 1178188 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640790048 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001326793 |
|---|
| Protein GI | 150396326 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.29497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.877087 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATTG GCGTCACCAA CGTGCCTGAA CGAAGCAAAT CCTCAGGATC GATCATCAAT
GATCCTCAGG TGCGCGGGAT ATTCTATCAG GCAATCACCA TCATCATTCT CGCAGCGCTC
ATCTACTGGA TCGTCGATAA CACTGTCGAC AATCTCAGGC GCGCGAATAT CGCGTCCGGC
TATGACTTTC TGAGGAGTCG CGCCGGTTTC GACGTCGGGC AGTCGCTGAT TTCATTCACC
AGCGATTCCA CCTATGGCCG CGCTTTGCTG GTCGGCTTCA TCAACACATT GCTCGTCGCG
ATCACCGGTA TCATCACCGC GACAATCATC GGCTTCCTCG TCGGTATCGG ACGCCTTTCG
CACAACTGGA TCATTGCCAA GCTCTCGCTG GCCTATGTGG AGGTGTTCCG CAACATCCCG
CCGCTGCTCG TCATATTCTT CTGGTATAGC GGGGTGCTGT CGATATTGCC GCAGGCACGA
GATGCACTTG CCCTGCCCTT CGATATCTTT CTGAGCAATC GCGGTGTCGC CTTTCCAAGG
CCGGTTGCCG GAGAGGGTGC CGAATACACG CTCCTCGCGT TTATCATCGC AATAGCTGCA
AGCGTGTTCT TTACCCGCTA CGCGCGCCAA CGGCAGTTGG CGACCGGCGA GCGGCTTCCC
GTCCTGTGGA CCGTTCTTGG ATTGATCATC GGTCTGCCGC TGATCACATT CCTCGTAACC
GGTGCGCCGA TCGGCTTCGA CGTTCCGGTG GCAGGCAAGT TCAACCTTAC CGGCGGTTCG
GTCGTCGGAC CGGAATTCAT GTCGCTGTTC CTGGCGCTCT CATTCTATAC GGCAGCCTTC
ATCGCCGAGA TCGTCAGGGC GGGTATCCGC GGTGTCTCAA AAGGACAGAC GGAGGCGGCA
CATGCACTTG GCATACGCCC ATCGCTGACG ACCCGCCTGG TGGTCGTGCC GCAGGCGATG
CGCATCATCA TTCCGCCGCT GACCAGCCAA TATCTTAACC TCACCAAGAA CTCCTCCCTG
GCGGTCGCAA TCGGCTATGC CGACCTCGTG GCCGTCGGCG GCACCATTCT CAACCAGACC
GGACAATCGA TCGAGGTCGT AAGCATCTGG CTCATCGTCT ATCTCAGCCT GAGCCTCGCG
ACGTCGCTGT TCATGAACTG GTACAACGCC CGCATGGCGC TGGTGGAGAG GTGA
|
|---|
| Protein sequence | MAIGVTNVPE RSKSSGSIIN DPQVRGIFYQ AITIIILAAL IYWIVDNTVD NLRRANIASG
YDFLRSRAGF DVGQSLISFT SDSTYGRALL VGFINTLLVA ITGIITATII GFLVGIGRLS
HNWIIAKLSL AYVEVFRNIP PLLVIFFWYS GVLSILPQAR DALALPFDIF LSNRGVAFPR
PVAGEGAEYT LLAFIIAIAA SVFFTRYARQ RQLATGERLP VLWTVLGLII GLPLITFLVT
GAPIGFDVPV AGKFNLTGGS VVGPEFMSLF LALSFYTAAF IAEIVRAGIR GVSKGQTEAA
HALGIRPSLT TRLVVVPQAM RIIIPPLTSQ YLNLTKNSSL AVAIGYADLV AVGGTILNQT
GQSIEVVSIW LIVYLSLSLA TSLFMNWYNA RMALVER
|
|---|
| |